Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq16 100 9e-16 seq9 86.0 2e-11 >seq16 Length=341705 Score = 100 bits (110), Expect = 9e-16 Identities = 144/202 (71%), Gaps = 1/202 (0%) Strand=Plus/Plus Query 443696 CAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAG 443755 ||||||| ||||| || | || ||||| | ||| || || | || ||| ||| Sbjct 109251 CAGCTTCCAGGAGCGCCTGATTGCGTTTGCAGCGGTGGAGGGCATCTTCTTTTCCGGGTC 109310 Query 443756 CTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTA 443815 ||| || | | |||||| | || ||||| || | |||| || |||||||| |||| Sbjct 109311 GTTTTGCGCGC-TATTCTGGCTTAAGAAGCGCGGCGTGATGCCGGGACTGACCTTCAGTA 109369 Query 443816 ACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCA 443875 |||| |||||| ||||||||||| ||||| ||||| || ||||| || ||||| Sbjct 109370 ACGAGCTGATCTCACGGGACGAGGGATTGCACACGGACTTTGCGTGTCTGCTTTACACGC 109429 Query 443876 AACACATCGTGCACAAGCTGCC 443897 | |||||| ||||||| |||| Sbjct 109430 ACCACATCAAGCACAAGTTGCC 109451 >seq9 Length=527489 Score = 86.0 bits (94), Expect = 2e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040 || ||| | ||||| ||||||||| || |||||||||||||| || |||||||| ||| Sbjct 427320 CCTATGCTGCGTGTTTTCAACAACACCGCCCGCTACGTCGATCAGGGTGGCGGCAAGCGC 427261 Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATT 255085 || || || | || ||||||||||| ||||| || |||||| Sbjct 427260 AAGGGCGCCTTTGCGATATACCTGGAGCCATGGCATGCTGACATT 427216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588333191623410