Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq9 98.7 1e-15 >seq9 Length=527489 Score = 98.7 bits (108), Expect = 1e-15 Identities = 460/712 (65%), Gaps = 35/712 (5%) Strand=Plus/Plus Query 110704 CAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGT 110763 |||||| || |||| ||| | || ||||| || ||||| || ||||||||||| | || Sbjct 426256 CAGGTAAATATTTGATGTAAAGGGCTCAAAACACTCATTGTTGCCCAAGATTTGCGATGT 426315 Query 110764 GGAGGCTGTTGGCATTGGTGCCATCA--AAAGACTGTTACGAAGACCCTTCTCCTTGATG 110821 || || || ||||| || |||| || ||||| ||| || | || |||| | Sbjct 426316 TGACGCGGTCGGCATGGGCGCCAACAGTAAAGA--GTTGCGCATGCCTGAAGATTTGACG 426373 Query 110822 CGTTCCTTGAGAACATCCCAGTCGTA---GTTGAGCTTGG--TTTCACCTTCCCACATGT 110876 || ||||| ||| ||||||| | | |||| ||||| ||| | ||||| | || Sbjct 426374 CGCTCCTTAAGAGCATCCCAATTCCATCGGTTGCTCTTGGGCTTTTTC--TCCCATAAGT 426431 Query 110877 CAAACTGAAGCACCCCTTGGGACGCGGGAGAACC-CTCAAA--GGTTTCATAGGAACCTT 110933 | ||||| || | || |||| |||||| || || ||| | | | |||| Sbjct 426432 CGAACTGCAGTATACCCTGGGCAGCGGGACTTTTGCTGAAGTCGGTGT---ACGCCCCTT 426488 Query 110934 GGGCTTCAGCCAATTC-ACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATA 110992 ||||| | || || | ||||| | | || | ||| ||||| |||||||| Sbjct 426489 CCTTCTCAGCAAGATCTACCGAA-GCCTCAACCGCGGCATAATAGATGGTCTCAAAGATT 426547 Query 110993 CGAGCATTCATC-TCCTTGGCTT----CATCTGAATCAAATGCGTAGCGGCACAAAATAA 111047 |||| | || ||| || ||| |||| |||||| | ||||| Sbjct 426548 TCTTCATTGAGAATCATTGATTTTTCACATGTGAACGGCTGGCGTAGGAG-----AATAA 426602 Query 111048 ATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTC 111107 | ||| ||||||||||| ||||| | ||||| || | | | ||| | | Sbjct 426603 AAGTATCTGCGAGACCTTGGACACCTATTCCAATTGGGCGATAATTTACGTTACTTCTCC 426662 Query 111108 GCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAA 111167 |||||||| || ||||| | | || || || ||||| || || | ||| || Sbjct 426663 TTGCAGTCTCTACCGGATAGTAGGAATTATCGATCACGCGGTTCAGGTTGTAGGTTACT- 426721 Query 111168 TCTTT-GTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCA--TTGACAT 111224 ||||| || | ||| | || ||| | || ||| || | || ||||| || ||| Sbjct 426722 TCTTTCGTTACTTCGTAGAGAAGTTCGTGATTAAAGGTCTGC-TC-CTTCACGTTTACAA 426779 Query 111225 ACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACT 111284 | || ||||||| || ||||| ||||| || || || || | ||||||| Sbjct 426780 ATCGCGGCAGGGCGACAGACGCCAAGTTGCACACCGCTGTTTCGTTAGGGGACGTGTACT 426839 Query 111285 CTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCT 111344 | | ||| || || ||||||||||| | |||||||| || | || || ||||| || Sbjct 426840 CAATAATCTCAGTGCATAAGTTGGAGCATTTAATCGTGCCAATATGTTTCTGGTTCGACT 426899 Query 111345 TCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 111396 | ||||| ||||||||||||||||||||| | || ||||| || |||| Sbjct 426900 TTTTGTTACACGCATCCTTGTAGAGCATGAACGGAACACCCGTTTCGATCTG 426951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030916644800