Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq16 132 6e-26 seq9 120 4e-22 >seq16 Length=341705 Score = 132 bits (146), Expect = 6e-26 Identities = 354/530 (67%), Gaps = 16/530 (3%) Strand=Plus/Minus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786 ||| || || |||| ||||||||||||||| ||||| || | || ||| ||||||| Sbjct 109704 ATACTCGCCGACCCTCTTCTCGAAGAAGTTCGTCTTACCCTGCAGCGAGATCATCTCCAT 109645 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAA-ATTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 || ||||| ||||| | || || | ||| || | |||| | ||| |||| Sbjct 109644 GAAGTCAAAGGGGTTTGTCGAATTGTAGTATTTCTCTT-CACCAAGCGCAACGAGCAGAC 109586 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGT-TA 129904 | |||| ||| |||| ||||||| | |||| ||| |||||||| || || || || Sbjct 109585 GGTCCGCGACAAACTCGATGTACTGACCCATCAGCTCCGAGTTCATCCCAATCAGACGTA 109526 Query 129905 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCG 129964 | || |||||||| |||||||| | | ||| ||||| || || | | | ||| | Sbjct 109525 CC-GGCAGCGCGTCGCAGATGAACTCGTGCTCGATGTCGACCGCATTCGTGATGATCTCC 109467 Query 129965 TGAATGGTCT-CCGTGCCAGGTCTATTGCGCAAAGT----CTTGAAGAGTTC-CACGGCA 130018 | | | | ||| | || || ||| | || | || | || |||| || Sbjct 109466 AGCACGCGCGACCGCGGCAA--CTTGTGCTTGATGTGGTGCGTGTAAAGCAGACACG-CA 109410 Query 130019 AACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 130078 || ||| ||| | |||||||| || ||||| || || || |||| ||| || ||| Sbjct 109409 AAGTCCGTGTGCAATCCCTCGTCCCGTGAGATCAGCTCGTTACTGAAGGTCAGTCCCGGC 109350 Query 130079 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 130138 || | || |||||||| | |||||| | ||| ||||| || || || |||||||| ||| Sbjct 109349 ATCACGCCGCGCTTCTTAAGCCAGAATAGCGCGCAAAACGACCCGGAAAAGAAGATGCCC 109290 Query 130139 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCAC 130198 ||||| || ||||||| || ||||| ||| || || | | | |||| Sbjct 109289 TCCACCGCTGCAAACGCAATCAGGCGCTCCTGGAAGCTGCT---CTCGCTCCCGATCCAC 109233 Query 130199 TTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 || ||||||| ||||| |||| || || || | ||||||||||| Sbjct 109232 CGCACGGCCCACTCGGCCTTCTTCTGAATGCAAGGTATCGTCTGGATCGC 109183 >seq9 Length=527489 Score = 120 bits (132), Expect = 4e-22 Identities = 230/335 (69%), Gaps = 8/335 (2%) Strand=Plus/Plus Query 118517 AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA 118576 |||||| ||| ||||||||||||||||| | ||||||||||||| | | ||| Sbjct 426598 AATAAAAGTATCTGCGAGACCTTGGACACCTATTCCAATTGGGCGATAATTTACGTTACT 426657 Query 118577 CTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGT 118636 ||| || ||||| || ||||| | ||||||| || | || || || | ||| Sbjct 426658 TCTCCTTGCAGTCTCTACCGGATAGTAGGAATTATCGATCACGCGGTTCAGGTTGTAGGT 426717 Query 118637 GACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAA--CTGCGAGTCTCTTCA--T 118692 || | || || | ||| | || ||||| || ||| |||| || ||||| | Sbjct 426718 TACTTCTTTCGTTACTTCGTAGAGAAGTTCGTGATTAAAGGTCTGC---TC-CTTCACGT 426773 Query 118693 TGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAG 118752 | ||| | || ||||||| ||||||| || ||||| | || || | | Sbjct 426774 TTACAAATCGCGGCAGGGCGACAGACGCCAAGTTGCACACCGCTGTTTCGTTAGGGGACG 426833 Query 118753 TGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGAT 118812 ||||||| ||||| || ||||| ||||| || | ||||| ||||| | | || || | Sbjct 426834 TGTACTCAATAATCTCAGTGCATAAGTTGGAGCATTTAATCGTGCCAATATGTTTCTGGT 426893 Query 118813 TTGACTTTGTGTTACACGCATCCTTGTAAAGCATG 118847 | |||||| ||||||||||||||||||| |||||| Sbjct 426894 TCGACTTTTTGTTACACGCATCCTTGTAGAGCATG 426928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434133199280