Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq9 197 2e-45 seq16 179 4e-40 >seq9 Length=527489 Score = 197 bits (218), Expect = 2e-45 Identities = 516/771 (67%), Gaps = 32/771 (4%) Strand=Plus/Plus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 || |||| ||||||||| || || |||| ||| | ||| || || || ||||| Sbjct 426797 GACGCCAAGTTGCACACCGCTGTTTCGTTAGGGGACGTGTACTCAATAATCTCAGTGCAT 426856 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 || || || | || || ||||| || | |||||||| ||| | |||||| || ||| Sbjct 426857 AAGTTGGAGCATTTAATCGTGCCAATATGTTTCTGGTTCGACTTTTTGTTACACGCATCC 426916 Query 79177 TTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATG 79236 |||||| |||| |||| || || || | |||| ||| | || | | ||| | Sbjct 426917 TTGTAGAGCATGAACGGAACACCCGTTTCGATCTGAGTCTCTAAAATGGCAAACCACAAT 426976 Query 79237 TCCCGGGCCCGGACAACCTTCTTGTACCGACCC------TGTGCGACGTACGTCCGGTAC 79290 ||| | || ||| | | | ||||| ||| | | | |||| | |||| Sbjct 426977 TCCTGTGCTTGGAT--CGTGC--GTACC--CCCATATTTTTTTCTTCGTAACTTTCGTAC 427030 Query 79291 AACTCGTTGAAAGCCTC-CCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCA--C 79347 || |||| ||| || ||||||| ||| || ||||||||| |||| || | | Sbjct 427031 AAG-CGTTCAAAATCTTTCCCATAGCAGTCGCTGAGTCCCGGGCAC--GTGCAGGGATCC 427087 Query 79348 ATCAG-GTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAG 79406 || || || | ||| || | |||| || |||||| ||||| || || ||||| || Sbjct 427088 ATTAGCGTCCAAGTTTTC-TGATTCTTTACACGCTCCATAAAGAGATCAGGAATCCAAAG 427146 Query 79407 GGCCGT-GAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGA 79465 | |||| |||||| ||||| ||| ||||| | ||| ||| | |||| | Sbjct 427147 G-CCGTAGAAGAGATCGCGCGCACGTTGATCCTCCTTACCCGTGTTACGCTTCAGCATCA 427205 Query 79466 GAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCT 79525 ||| || | ||||| || ||||| |||||||| || || || || | |||||||||| Sbjct 427206 CAAACTCGAAAATGTCAGCATGCCATGGCTCCAGGTATATCGCAAAGGCGCCCTTGCGCT 427265 Query 79526 TGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGA 79585 ||||||| ||||| | |||||| ||||| |||||||||||||| || ||||| ||||||| Sbjct 427266 TGCCGCCACCCTGATCGACGTAGCGGGCGGTGTTGTTGAAAACACGCAGCATAGGCACGA 427325 Query 79586 TGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGC 79645 || | || | || ||||| ||| || | || || || ||||| | Sbjct 427326 GACCATTGGAGGTACCATTCGTACCGGCAATATAGCTTCCAGACGAGCGGATGTTATGGA 427385 Query 79646 AGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGT 79705 || | || || || || | | | ||| ||| ||| |||||| || || |||| Sbjct 427386 CATGTAGCCCAATCCCACCAGCCGATTTGCTGATCACGGCGGTCTCCTTCAGTGTATCGT 427445 Query 79706 AGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGC---AGCTCGACATCTGTG 79762 |||||||||| || || || |||||||| || || || | |||| ||| |||| Sbjct 427446 AGATGCCCTCAATGCTATCCTCTTTCATAGCTACGAGAAAACACGAGCT---CATTTGTG 427502 Query 79763 G--GTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAA 79811 | || | ||| |||| ||||||||| || || || ||||| |||||||| Sbjct 427503 GCCGTGG--CGTCCCGGAGTTGAAGAGTGTTGGTGTAGCGTGAGTGAAGAA 427551 Score = 179 bits (198), Expect = 4e-40 Identities = 306/438 (70%), Gaps = 12/438 (3%) Strand=Plus/Minus Query 19193 TTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAACAAC--CCGCAGATGT 19250 |||||||| ||||| || || || || |||||| |||| ||| | || || || ||| Sbjct 427551 TTCTTCACTCACGCTACACCAACACTCTTCAACTCCGGGACG--CCACGGCCACAAATG- 427495 Query 19251 CGAGCT---GTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGC 19307 |||| |||| || || |||||||| || || |||||||||||||||||||| || | Sbjct 427494 --AGCTCGTGTTTTCTCGTAGCTATGAAAGAGGATAGCATTGAGGGCATCTACGATACAC 427437 Query 19308 TCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCACTGCTCGAATA 19367 | |||||| ||| ||| ||| | | | || || || ||| | || | || | Sbjct 427436 TGAAGGAGACCGCCGTGATCAGCAAATCGGCTGGTGGGATTGGGCTACATGTCCATAACA 427377 Query 19368 TCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGTATCGTCCCAA 19427 |||| ||| ||| | || || ||||| || || | ||| |||| || | Sbjct 427376 TCCGCTCGTCTGGAAGCTATATTGCCGGTACGAATGGTACCTCCAATGGTCTCGTGCCTA 427317 Query 19428 TGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGG 19487 |||| || || ||||||||||| ||| | |||||| | ||||| |||||||| ||||||| Sbjct 427316 TGCTGCGTGTTTTCAACAACACCGCCCGCTACGTCGATCAGGGTGGCGGCAAGCGCAAGG 427257 Query 19488 GCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGC 19547 || | || || || ||||| ||||||||||| || ||| | | || || | ||| Sbjct 427256 GCGCCTTTGCGATATACCTGGAGCCATGGCATGCTGACATTTTCGAGTTTGTGATGCTGA 427197 Query 19548 GCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTC-ACGGCCTTGTGGATT 19606 | ||| |||| | ||||| || ||||| |||||| |||||||| |||||| Sbjct 427196 AGCGTAACACGGGTAAGGAGGATCAACGTGCGCGCGATCTCTTCTACGGCCTT-TGGATT 427138 Query 19607 CCGGACCTATTCATGGAG 19624 || || || || |||||| Sbjct 427137 CCTGATCTCTTTATGGAG 427120 Score = 150 bits (166), Expect = 2e-31 Identities = 307/450 (68%), Gaps = 11/450 (2%) Strand=Plus/Minus Query 20375 CGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAAC 20434 |||||||| || || | ||||||||||||||||| || || | || ||| |||| ||| Sbjct 426354 CGCAACTCTTTACTGTTGGCGCCCATGCCGACCGCGTCAACATCGCAAATCTTGGGCAAC 426295 Query 20435 AACGAGGCTTTCGAGCCGTACACGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAG 20494 || ||| ||| ||||| | || | || || ||| |||||||| || ||| ||| Sbjct 426294 AATGAGTGTTTTGAGCCCTTTACATCAAATATTTACCTGCGTCGTGTTCTAAGCGGAGAG 426235 Query 20495 TTCGTCATG--GTAAACAAGCACCTGGTCCGCGACTTGCAGAAGATCGATATGTGGTCGC 20552 || || || || ||||| ||||||| || || || || || |||||| Sbjct 426234 TT--TCCTGTTGTGAACAAATACCTGGTGCGTGATCTGATCGAGCGCGGGATGTGGAATG 426177 Query 20553 CCAAAATTAAGAATGAAATTGTCCGAGCCGGCGGGAGCGTCCAGGCATTG---GATATCC 20609 || ||| ||||| ||| | | ||| | || | | || || | Sbjct 426176 ACACTATTCGCAATGAGATTATTACTTTCAACGGCTCTATTCAATCCGTCAAAGAAATTC 426117 Query 20610 CCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCG 20669 | || |||||||||| | ||||||||||| ||||| || | ||| | | || |||| Sbjct 426116 CGAAGGACCTCAAGGAGCTCTACAGGACCGTCTGGGAGATTTCGCAGCGGCGGATAATCG 426057 Query 20670 ACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGG 20729 | ||||| | || ||||| |||||||||||||||||||| || || ||||||||| Sbjct 426056 AAATGGCTGTTGACCGCGGAAAGTACATCGACCAGTCCCAGTCTCTAAACCTCTTCATGG 425997 Query 20730 AGAATCCGAGC-CTGG-CGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCT 20787 ||| ||| | |||| || | | | |||||||| | | | ||||| | |||| || Sbjct 425996 AGAGTCCTTCCTCTGGCCGCA--TAACGTCCATGCACTTTTTCTGCTGGGAACAGGGCCT 425939 Query 20788 CAAGACGGGCATGTACTATCTGCGGACCCG 20817 |||||||||||||||||| || || || || Sbjct 425938 CAAGACGGGCATGTACTACCTTCGCACACG 425909 Score = 123 bits (136), Expect = 3e-23 Identities = 144/191 (75%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 78186 GCGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCAT 78245 |||||| || | |||||||||||||||||||| |||| | ||| | | | | |||||| Sbjct 425908 GCGTGTGCGAAGGTAGTACATGCCCGTCTTGAGGCCCTGTTCCCAGCAGAAAAAGTGCAT 425967 Query 78246 ACTCGACA-GCTTGGCCAGACTCGGGT-TCTCCATGAAGATGTTGAGCGACTGGGACTGG 78303 || | || ||||||| || |||||||||||| ||| || |||||||||||| Sbjct 425968 GGACGTTATGC--GGCCAGAGGAAGGACTCTCCATGAAGAGGTTTAGAGACTGGGACTGG 426025 Query 78304 TCGATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAG 78363 ||||||||| |||||||| | ||||| ||||| | | | |||| |||||||||| Sbjct 426026 TCGATGTACTTTCCGCGGTCAACAGCCATTTCGATTATCCGCCGCTGCGAAATCTCCCAG 426085 Query 78364 ATGGTCCGGTA 78374 | ||||| ||| Sbjct 426086 ACGGTCCTGTA 426096 >seq16 Length=341705 Score = 179 bits (198), Expect = 4e-40 Identities = 536/812 (66%), Gaps = 15/812 (2%) Strand=Plus/Plus Query 59617 TCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATT 59676 ||||| | || |||||||| || || | | | ||| || ||| |||| ||||| || Sbjct 108899 TCTGGACGGTGGAGGAGATCGATCTGGGCAGCGACATGGTGGACTGGGCGAAGCTGAACG 108958 Query 59677 ACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTG 59736 | | ||||| || ||||||||| || || ||||||||||| | || || || || | Sbjct 108959 ATGGCGAGCGACACTTCATCAAGCACGTGCTTGCCTTCTTCGCAGGAAGCGACGGTATCG 109018 Query 59737 TGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGT 59796 |||| || || | | | ||| | ||||| |||| | ||||| || ||| Sbjct 109019 TGATCGAGAACCTCGCGCAGCGCTTCATGACTGATGTGAAGATACCGGAGGCGCGTGCGT 109078 Query 59797 TCTACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCG 59856 |||| | || |||| | | | ||| ||||||||| ||||| ||||| | || | | Sbjct 109079 TCTATGGGTTTCAGCTGATGATGGAGAATATCCACTCGGAGACCTACTCAGTGCTGTTGG 109138 Query 59857 ATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCC 59915 | | || || ||||| || ||||||| | || | | ||| || ||||| | | Sbjct 109139 ACACGTATATCCTCGATCCTGATGAGAAGGTAAGCTTGCTGCATGCGATCCAGACGATAC 109198 Query 59916 CCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCATT 59974 | ||| | | | | || || || |||||| ||| |||||| | | | ||||| | | Sbjct 109199 CTTGCATTCAGA-AGAAGGCCGAGTGGGCCGTGCGGTGGATCGGGAGCGAGAGCAGC--T 109255 Query 59975 TGCACAA-CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCT 60033 | || | || || || || |||||| ||||| || |||||||| || || ||||| | Sbjct 109256 TCCAGGAGCGCCTGATTGCGTTTGCAGCGGTGGAGGGCATCTTCTTTTCCGGGTCGTTTT 109315 Query 60034 GTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGC 60093 | || | |||||||| || ||||| ||| | |||||||| |||| ||| ||||||| Sbjct 109316 GCGCGCTATTCTGGCTTAAGAAGCGCGGCGTGATGCCGGGACTGACCTTCAGTAACGAGC 109375 Query 60094 TGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACC-- 60150 |||| || ||||||||||| | || ||| ||||| ||| | ||| || | |||| Sbjct 109376 TGATCTCACGGGACGAGGGATTGCACACGGACTTTGC-GTGTCTGCTTTACACGCACCAC 109434 Query 60151 -TATTGGAAAAATGCCCTTCCAAGGATATTCACAAGATTGTTCAGTGGGCTTGTGAAGTG 60209 | | | || | || | | | |||| | | || || | Sbjct 109435 ATCAAGCACAAGTTGCCGCGGTCGCGCGTGCTGGAGATCATCACGAATGCGGTCGACATC 109494 Query 60210 GAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAG-A 60268 ||| |||||||||| || ||||| || || || || ||| || | |||| Sbjct 109495 GAGCACGAGTTCATCTGCGACGCGCTGCCGGTACGTCTGATTGGGATGAACTC-GGAGCT 109553 Query 60269 AATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGACC 60328 ||| |||||||| |||||||||||||||| || | | | |||| ||| || Sbjct 109554 GATGGGTCAGTACATCGAGTTTGTCGCGGACCGTCTGCTCGTTGCGCTTGGTGAA-GAGA 109612 Query 60329 AAT-TTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGA 60387 ||| ||| || ||||| || |||| ||||||| |||||| || | || |||| Sbjct 109613 AATACTACAATTCGACAAACCCCTTTGACTTCATGGAGATGATCTCGCTGCAGGGTAAGA 109672 Query 60388 CCAACTTCTTTGAGAAGCGGGTCGGGGATTAT 60419 | |||||||| |||||| ||||||| || ||| Sbjct 109673 CGAACTTCTTCGAGAAGAGGGTCGGCGAGTAT 109704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548523853794720