Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq9 141 1e-28 seq16 84.2 2e-11 >seq9 Length=527489 Score = 141 bits (156), Expect = 1e-28 Identities = 154/202 (76%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 55727 CTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGT 55786 ||||||||| | ||| |||| || ||||||||| | ||| | | | || || ||| | Sbjct 426108 CTCAAGGAGCTCTACAGGACCGTCTGGGAGATTTCGCAGCGGCGGATAATCGAAATGGCT 426049 Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846 | ||| || || |||||||||||||||||||||||| ||| |||||||||||| |||| Sbjct 426048 GTTGACCGCGGAAAGTACATCGACCAGTCCCAGTCTCTAAACCTCTTCATGGAGAGTCCT 425989 Query 55847 T-CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 | | |||||| | | || |||||||||| | | ||| | |||| ||||||||||| Sbjct 425988 TCCTCTGGCC-GCATAACGTCCATGCACTTTTTCTGCTGGGAACAGGGCCTCAAGACGGG 425930 Query 55906 TATGTACTATCTGCGGACCCGC 55927 |||||||| || || || ||| Sbjct 425929 CATGTACTACCTTCGCACACGC 425908 Score = 141 bits (156), Expect = 1e-28 Identities = 313/461 (68%), Gaps = 14/461 (3%) Strand=Plus/Minus Query 53245 GACGTACGACTTAATGAGCCAAAAGTA--CTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 |||||| || |||||| ||| | | ||| || ||||| || ||||| || |||||| Sbjct 427576 GACGTATGATTTAATGT--CAAGGGGATTCTTCACTCACGCTACACCAACACTCTTCAAC 427519 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCT---GCTTCCTGGTGGCGATGAAGGATGAC 53359 | || ||| | || || ||| |||| | || || || || ||||| || || Sbjct 427518 TCCGGGACGCCACGGCCACAAATG---AGCTCGTGTTTTCTCGTAGCTATGAAAGAGGAT 427462 Query 53360 TCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGT 53419 || || ||||||||||| || || |||||| ||| ||| ||| | | | ||| Sbjct 427461 AGCATTGAGGGCATCTACGATACACTGAAGGAGACCGCCGTGATCAGCAAATCGGCTGGT 427402 Query 53420 GGTATCGGTATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAAC 53479 || || || | || | ||| |||| || || | || || ||||| Sbjct 427401 GGGATTGGGCTACATGTCCATAACATCCGCTCGTCTGGAAGCTATATTGCCGGTACGAAT 427342 Query 53480 GGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTC 53539 || | || |||| ||||||||||||| || || ||||||||||| ||||| |||||| Sbjct 427341 GGTACCTCCAATGGTCTCGTGCCTATGCTGCGTGTTTTCAACAACACCGCCCGCTACGTC 427282 Query 53540 AACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCC 53599 | |||||||| || ||||||||||| | || || || ||||| ||||| ||||| || Sbjct 427281 GATCAGGGTGGCGGCAAGCGCAAGGGCGCCTTTGCGATATACCTGGAGCCATGGCATGCT 427222 Query 53600 GACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CG 53658 |||||| | |||||| | |||| | || |||| | || || || ||| || Sbjct 427221 GACATTTTCGAGTTTGTGATGCTGAAGCGTAACACGGGTAAGGAGGATCAACG-TGCGCG 427163 Query 53659 TGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATG 53698 || || || ||| || || |||||||| || ||||| ||| Sbjct 427162 CGATCTCTTCTACGGC-CTTTGGATTCCTGATCTCTTTATG 427123 >seq16 Length=341705 Score = 84.2 bits (92), Expect = 2e-11 Identities = 299/462 (65%), Gaps = 4/462 (1%) Strand=Plus/Minus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 || || ||||| | || |||||||| | ||| || | || || || || || ||| Sbjct 109358 AGTCCCGGCATCACGCCGCGCTTCTTAAGCCAGAATAGCGCGCAAAACGACCCGGAAAAG 109299 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGC-ATCGGAAGT 74923 |||||||| || || ||||| || | ||||| | | ||| | ||| ||| Sbjct 109298 AAGATGCCCTCCACCGCTGCAAACGCAATCAGGCGCTCCTGGAA-GCTGCTCTCGCTCCC 109240 Query 74924 CATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGC-AGGGACAGTATCGATCGCTT 74982 ||||| | ||||| || || ||| | ||| || ||| | || | |||||| | Sbjct 109239 GATCCACCGCACGGCCCACTCGGC-CTTCTTCTGAATGCAAGGTATCGTCTGGATCGCAT 109181 Query 74983 GGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACG 75042 | | | |||| ||||||| || ||||| || | |||| | || | |||||| | Sbjct 109180 GCAGCAAGCTTACCTTCTCATCAGGATCGAGGATATACGTGTCCAACAGCACTGAGTAGG 109121 Query 75043 TCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAA 75102 ||||||| || || ||| | | | ||| || | ||||| | |||||||| | | Sbjct 109120 TCTCCGAGTGGATATTCTCCATCATCAGCTGAAACCCATAGAACGCACGCGCCTCCGGTA 109061 Query 75103 TCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGG 75162 ||| ||||| | || | ||| ||||| || ||||| ||||| | | Sbjct 109060 TCTTCACATCAGTCATGAAGCGCTGCGCGAGGTTCTCGATCACGATACCGTCGCTTCCTG 109001 Query 75163 CGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAAT 75222 |||| || || || || ||||| ||||| ||||| | || | || || |||| | Sbjct 109000 CGAAGAAGGCAAGCACGTGCTTGATGAAGTGTCGCTCGCCATCGTTCAGCTTCGCCCAGT 108941 Query 75223 CCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGA 75264 || || ||| | ||| ||| |||||||| |||||||||| Sbjct 108940 CCACCATGTCGCTGCCCAGATCGATCTCCTCCACCGTCCAGA 108899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215056052400