Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq16 159 4e-34 seq4 156 5e-33 seq9 102 9e-17 >seq16 Length=341705 Score = 159 bits (176), Expect = 4e-34 Identities = 526/811 (65%), Gaps = 15/811 (2%) Strand=Plus/Plus Query 64352 TCTGGACGGTCGAGGAGGTTGATCTCGCCAAGGATCTCAGCGACTGGGAAAACCTAAACT 64411 |||||||||| |||||| | ||||| | || || | ||||||| || || ||| Sbjct 108899 TCTGGACGGTGGAGGAGATCGATCTGGGCAGCGACATGGTGGACTGGGCGAAGCTGAACG 108958 Query 64412 CACAGGAACAGCACTTCATCAAGTTGGTCCTAGCATTCTTCGCATCAAGTGACGGAATTG 64471 || | |||||||||||| || || || ||||||||| ||| ||||| || | Sbjct 108959 ATGGCGAGCGACACTTCATCAAGCACGTGCTTGCCTTCTTCGCAGGAAGCGACGGTATCG 109018 Query 64472 TGTTTGAGAATTTGGACCTAAATTTTACAAAGGATGTTCAGATCCCAGAGGCGCGGTCAT 64531 || | ||||| | | | || | | ||||| |||| || |||||||| | | Sbjct 109019 TGATCGAGAACCTCGCGCAGCGCTTCATGACTGATGTGAAGATACCGGAGGCGCGTGCGT 109078 Query 64532 TCTATGCGTATCAGGGATTTAACGAAAGTATTCATGGCGAGACGTATTCGCTCATGATTG 64591 |||||| || |||| | | || | ||| || ||||| || || | || | | Sbjct 109079 TCTATGGGTTTCAGCTGATGATGGAGAATATCCACTCGGAGACCTACTCAGTGCTGTTGG 109138 Query 64592 ACAAGTTTGTTCGGGATCCTGTCGAGAAGGATGGACTGTTCAGGGCTATAGAGACTGTAC 64651 ||| || | | | ||||||| ||||||| | || | || || |||| ||| Sbjct 109139 ACACGTATATCCTCGATCCTGATGAGAAGGTAAGCTTGCTGCATGCGATCCAGACGATAC 109198 Query 64652 CCGCTGTTACTAAAAAGGCTGAATGGGCCATCCGGTGGAT--GAATCGTGGGTCGTCGTT 64709 | || || ||||| || |||||| | |||||||| | | || | | | Sbjct 109199 CTTGCATTCAGAAGAAGGCCGAGTGGGCCGTGCGGTGGATCGGGAGCGAGAGCAGCTTCC 109258 Query 64710 TGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTG 64769 || |||| || || ||||| ||||| || || |||||||| ||||| || || Sbjct 109259 AGG--AGCGCCTGATTGCGTTTGCAGCGGTGGAGGGCATCTTCTTTTCCGGGTCGTTTTG 109316 Query 64770 TTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCT 64829 | | |||||||| || ||||| ||| ||||||| || ||| | || |||||||| Sbjct 109317 CGCGCTATTCTGGCTTAAGAAGCGCGGCGTGATGCCGGGACTGACCTTCAGTAACGAGCT 109376 Query 64830 GATCTCTCGGGACGAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCA---GCCACCT 64886 |||||| ||||||||||| | ||| || |||||| | || | || |||| | Sbjct 109377 GATCTCACGGGACGAGGGATTGCACACGGACTTTGCGTGTCTGCTTTACACGCACCACAT 109436 Query 64887 CAAGGACAAACCATCACATGGGACTATAATTGATATAGTAA--AATCGGCTGTAGAAATT 64944 |||| |||| | | | | | || || | | ||| || || || || Sbjct 109437 CAAGCACAAGTTGCCGCGGTCGCGCGTGCTGGAGATCATCACGAAT--GCGGTCGACATC 109494 Query 64945 GAAAAGGAATTCATTACTGC--CGCGCTTCCGTGTCGTCTCATCGGCATGGATGCCGATA 65002 || | || ||||| |||| |||||| ||| ||||| || || ||| | | || Sbjct 109495 GAGCACGAGTTCAT--CTGCGACGCGCTGCCGGTACGTCTGATTGGGATGAACTCGGAGC 109552 Query 65003 AGATGAAACAGTATATCGAATTTGTAGCAGATCGCCTGCTTACTCAGTTTGGTATTAAGC 65062 |||| ||||| ||||| ||||| || || || ||||| | | ||||| || Sbjct 109553 TGATGGGTCAGTACATCGAGTTTGTCGCGGACCGTCTGCTCGTTGCGCTTGGTGAAGAGA 109612 Query 65063 CCTACTGGAATTCTTCAAATCCATTTGACTGGATGGAGACGATCAGCCTGGAGGGGAAGA 65122 |||| ||||| |||| || ||||||| ||||||| |||| ||| |||| |||| Sbjct 109613 AATACTACAATTCGACAAACCCCTTTGACTTCATGGAGATGATCTCGCTGCAGGGTAAGA 109672 Query 65123 CTAACTTTTTTGAAAAGAGGGTAGGTGATTA 65153 | ||||| || || |||||||| || || || Sbjct 109673 CGAACTTCTTCGAGAAGAGGGTCGGCGAGTA 109703 >seq4 Length=877237 Score = 156 bits (172), Expect = 5e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27402 TATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTC 27461 || |||||| ||||| || ||||| || || |||||||| || | || ||||| ||| | Sbjct 46373 TACAATGCAGATCTTCGTGAAGACACTGACAGGCAAGACGATCGCGCTCGAGGTCGAGGC 46432 Query 27462 AGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 27521 | |||| || | ||| ||||||| || || ||||| |||||||| ||||| || || Sbjct 46433 GAGCGATACGATCGATAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATTCCCCCGGA 46492 Query 27522 CCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 ||||||||||| || || || || ||||| || ||||| | || || | || ||||| Sbjct 46493 TCAGCAGCGTCTGATCTTCGCAGGCAAGCAGCTGGAGGAGGGCCGCACATTGGCGGACTA 46552 Query 27582 TAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| |||| ||||| ||||| || || || || ||||||| || ||||| Sbjct 46553 CAATATCCAGAAGGAGTCCACGCTACACCTGGTGCTGCGTCTGCGTGGTGG 46603 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || | || ||||| ||| | | Sbjct 46605 ATGCAGATCTTCGTGAAGACACTGACAGGCAAGACGATCGCGCTCGAGGTCGAGGCGAGC 46664 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| ||||||| || || ||||| |||||||| ||||| || || ||| Sbjct 46665 GATACGATCGATAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATTCCCCCGGATCAG 46724 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| || ||||| | || || | || ||||| ||| Sbjct 46725 CAGCGTCTGATCTTCGCAGGCAAGCAGCTGGAGGAGGGCCGCACATTGGCGGACTACAAT 46784 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 |||| ||||| ||||| || || || || Sbjct 46785 ATCCAGAAGGAGTCCACGCTGCACCTGGT 46813 >seq9 Length=527489 Score = 102 bits (112), Expect = 9e-17 Identities = 314/477 (66%), Gaps = 23/477 (5%) Strand=Plus/Plus Query 81220 TTCTCTACAGCCTTCATGAAAGCG-TCAGGGATCCAGAGGGCGGTGAACAGGTCGCG-GC 81277 |||| |||| || ||| |||| | ||||| ||||| ||| || ||| || ||||| || Sbjct 427109 TTCTTTACACGCTCCAT-AAAGAGATCAGGAATCCAAAGGCCGTAGAAGAGATCGCGCGC 427167 Query 81278 AGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCAT 81337 | || ||||| | |||| ||| | || | | ||| || | ||||| |||| Sbjct 427168 A-CGTTGATCCTCCTTACCCGTGTTACGCTTCAGCATCACAAACTCGAAAATGTCAGCAT 427226 Query 81338 GCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCCACCCTGGTTGACGT 81394 ||||||||||||| || | || | | |||||||| | ||||||||| | ||||| Sbjct 427227 GCCATGGCTCCAGGTATATCGCAAAGGCGCCCTTGCGCTTGCCGCCACCCTGATCGACGT 427286 Query 81395 AACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCG 81454 | ||||| || ||| || ||||||| |||||| | || ||||| || ||| |||| Sbjct 427287 AGCGGGCGGTGTTGTTGAAAACACGCAGCATAGGCACGAGACCATTGGAGGTACCATTCG 427346 Query 81455 TACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTG 81514 |||| | ||| || | ||| | || || || || || ||||| | Sbjct 427347 TACCGGCAATATAGCTTCCAGACGAGCGGATGTTATGGACATGTAGCCCAATCCCACCAG 427406 Query 81515 ACCACTTTGAAATCTGAGCACACCGG-----TTCATGGTCTCATAAATTCCCTCGATGCT 81569 || |||| |||| ||| ||| |||| || || || || ||||| ||||| Sbjct 427407 -CCGATTTG----CTGATCACGGCGGTCTCCTTCAGTGTATCGTAGATGCCCTCAATGCT 427461 Query 81570 ATCTTTTTTCATGTCAAGCAAGAAAC---AGCTTGACATCTGAGGGCTTTTTGAGCCGGC 81626 ||| | |||||| | | | |||| |||| ||| || || | | | |||| Sbjct 427462 ATCCTCTTTCATAGCTACGAGAAAACACGAGCT---CATTTGTGGCCGTGGCGTCCCGGA 427518 Query 81627 ATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGT 81683 ||||| |||||||| || |||||| |||| | | ||||||| | ||||| || Sbjct 427519 GTTGAAGAGTGTTGGTGTAGCGTGAGTGAAGAATCCCCTTGACATTAAATCATACGT 427575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309416214560