Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq4 145 2e-29 >seq4 Length=877237 Score = 145 bits (160), Expect = 2e-29 Identities = 165/220 (75%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || ||||| || || ||||| | || | || || Sbjct 46588 AGCACCAGGTGTAGCGTGGACTCCTTCTGGATATTGTAGTCCGCCAATGTGCGGCCCTCC 46529 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||||||||| || || || || || || |||| || ||||| ||| Sbjct 46528 TCCAGCTGCTTGCCTGCGAAGATCAGACGCTGCTGATCCGGGGGAATGCCCTCCTTATCC 46469 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 |||||||| ||||| || ||||| || || ||| || |||||||| | |||| Sbjct 46468 TGGATCTTCGCCTTCACATTATCGATCGTATC---GCTCGCCTCGACCTCGAGCGCGATC 46412 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTAT 211119 ||||| || || || ||||| || || | ||||||| ||| Sbjct 46411 GTCTTGCCTGTCAGTGTCTTCACGAAGATCTGCATTGTAT 46372 Score = 141 bits (156), Expect = 2e-28 Identities = 161/215 (75%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || ||||| || || ||||| | || | || || Sbjct 46816 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCCGCCAATGTGCGGCCCTCC 46757 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||||||||| || || || || || || |||| || ||||| ||| Sbjct 46756 TCCAGCTGCTTGCCTGCGAAGATCAGACGCTGCTGATCCGGGGGAATGCCCTCCTTATCC 46697 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 |||||||| ||||| || ||||| || || ||| || |||||||| | |||| Sbjct 46696 TGGATCTTCGCCTTCACATTATCGATCGTATC---GCTCGCCTCGACCTCGAGCGCGATC 46640 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || ||||| || || | |||||| Sbjct 46639 GTCTTGCCTGTCAGTGTCTTCACGAAGATCTGCAT 46605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159149950474370