Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq4 109 5e-19 >seq4 Length=877237 Score = 109 bits (120), Expect = 5e-19 Identities = 169/240 (70%), Gaps = 1/240 (0%) Strand=Plus/Minus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | || || || ||||| | ||| | ||||| || |||||| ||| || || || Sbjct 46843 AAATATCTTTAA-CCGCCTCTCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGAT 46785 Query 39105 ATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTG 39164 ||| || || || | ||| || | || || ||||| ||||| || || || |||||||| Sbjct 46784 ATTGTAGTCCGCCAATGTGCGGCCCTCCTCCAGCTGCTTGCCTGCGAAGATCAGACGCTG 46725 Query 39165 CTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC 39224 ||| || | ||| | || ||| || ||| ||| ||| || | | | | |||||| Sbjct 46724 CTGATCCGGGGGAATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTATCGATCGTATC 46665 Query 39225 GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| ||| || || | || ||| | || || ||||| || || || ||||| ||||| Sbjct 46664 GCTCGCCTCGACCTCGAGCGCGATCGTCTTGCCTGTCAGTGTCTTCACGAAGATCTGCAT 46605 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||||||||| ||| || || ||||| || || || | ||| || | || || Sbjct 46586 CACCAGGTGTAGCGTGGACTCCTTCTGGATATTGTAGTCCGCCAATGTGCGGCCCTCCTC 46527 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || ||||||||||| || | ||| | || ||| || ||| Sbjct 46526 CAGCTGCTTGCCTGCGAAGATCAGACGCTGCTGATCCGGGGGAATGCCCTCCTTATCCTG 46467 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| ||| || | | | | ||||||||||| ||| || || | || ||| | || Sbjct 46466 GATCTTCGCCTTCACATTATCGATCGTATCGCTCGCCTCGACCTCGAGCGCGATCGTCTT 46407 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| || || || ||||| ||||| Sbjct 46406 GCCTGTCAGTGTCTTCACGAAGATCTGCAT 46377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429544877557994