Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20EM1_20[genbank_20GCA_5F000582765.1_2020 14-02-26] 138 sequences; 17,780,869 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq4 143 2e-29 >seq4 Length=877237 Score = 143 bits (158), Expect = 2e-29 Identities = 172/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||||| || |||||| ||||||||| || || ||||| | Sbjct 46604 GCCACCACGCAGACGCAGCACCAGGTGTAGCGTGGACTCCTTCTGGATATTGTAGTCCGC 46545 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||||| | || || ||||||||||| ||||| ||||| ||||| || |||| ||| Sbjct 46544 CAATGTGCGGCCCTCCTCCAGCTGCTTGCCTGCGAAGATCAGACGCTGCTGATCCGGGGG 46485 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGA-CGACACAGTGTCGCTCGACTCC 41812 || || |||||| ||| ||| || ||||| | | || | || ||||||| ||| Sbjct 46484 AATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTATCG--ATCGTATCGCTCGCCTCG 46427 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || ||||| || || ||||| ||||| ||||| |||||||| Sbjct 46426 ACCTCGAGCGCGATCGTCTTGCCTGTCAGTGTCTTCACGAAGATCTGCAT 46377 Score = 143 bits (158), Expect = 2e-29 Identities = 172/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| | || || | |||||| ||||||||| ||||||||| || || ||||| | Sbjct 46831 CCGCCTCTCAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCCGCC 46772 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || ||||||||||| ||||| ||||| ||||| || |||| |||| Sbjct 46771 AATGTGCGGCCCTCCTCCAGCTGCTTGCCTGCGAAGATCAGACGCTGCTGATCCGGGGGA 46712 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGA-CGACACAGTGTCGCTCGACTCCA 41813 | || |||||| ||| ||| || ||||| | | || | || ||||||| ||| | Sbjct 46711 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTATCG--ATCGTATCGCTCGCCTCGA 46654 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || ||||| || || ||||| ||||| ||||| ||||||||| Sbjct 46653 CCTCGAGCGCGATCGTCTTGCCTGTCAGTGTCTTCACGAAGATCTGCATG 46604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303202525600