Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq11 91.5 2e-13 >seq11 Length=614005 Score = 91.5 bits (100), Expect = 2e-13 Identities = 374/587 (64%), Gaps = 12/587 (2%) Strand=Plus/Plus Query 145693 ACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGG 145752 ||||| || ||||| ||||| ||||| ||| ||| | || || ||||||| | Sbjct 409205 ACGTGATTTTTGTAGATATGCGCATCCCCAAGGGTGTGTACGAGCTCTCCGGGCTTTAAC 409264 Query 145753 CCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACC 145812 || || | |||| || |||| |||| ||| || || || |||||||| Sbjct 409265 CCAGTCGCCTTCGCGATCAGAATTGTCAAAAGGGCGTAAGAAGCGATATTAAAGGGCACG 409324 Query 145813 CCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCC----CGCCCGC 145868 || |||||||| || | ||||| ||||| ||| ||| ||||||||| | || | Sbjct 409325 CCAAGCCCCATATCGCAGGAGCGTTGGTAAAGCATGCACGAGAGCTCCTTCGTCACCGGG 409384 Query 145869 --CACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCC 145926 |||||||||||| | || || || |||||||| || ||||| |||| | | | Sbjct 409385 TTCACGTAGAACTGCCCGAGAAGATGACAGGGCGGGAGCGCCATTTTATGCAGTGCGGAC 409444 Query 145927 GGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGA---TCTCCCCT 145983 || ||||| ||| ||| || | || || | | || || |||||| | ||| | Sbjct 409445 GGATTCCACGCGATGAAGAGCATCCGCCGGTCGTTTGGTCTCGTCTTGAGCGTTTCCACG 409504 Query 145984 ATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTAC 146043 || || ||| || || || |||| ||| ||| | | | | || ||| Sbjct 409505 AT---GTATTTGATTTGATCTACACCCTTCCCGTCGTAGTTCGCCCGGTGGTTTGTATAC 409561 Query 146044 GCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTG 146103 | || ||||| |||| ||| || || ||||| || || || || ||| || || Sbjct 409562 TCCGCGCCGAAATGCCGCCATTGAAAGCCGTAAACAGGGCCGAGATCCATCTCTTCGTTG 409621 Query 146104 TGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACG 146163 | || ||| | | || || | ||||| ||||| | |||||||| | || Sbjct 409622 TCGTGCAATCCGCGGCTATCAAGAAACGCACGGGAGCCGTTATCATCCCAGATATGAACC 409681 Query 146164 CCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCG 146223 || | || ||| || | || || || | || ||||| |||||||| ||| Sbjct 409682 CCTTTATCGCTCAGCAGCTTTGCGTTTGTCTCGCCGCGGAGAAACCACAGCAGCTCCTCG 409741 Query 146224 AGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGAACTG 146270 ||| |||| ||| ||||| | |||||||| |||| |||| ||| Sbjct 409742 GAGACGCCCCGCCAAAAGACGCGTTTGGTGGTGAGCAAAGGGAGCTG 409788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590076180419360