Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq8 289 3e-73 seq14 154 2e-32 seq7 132 5e-26 seq5 109 6e-19 >seq8 Length=1060349 Score = 289 bits (320), Expect = 3e-73 Identities = 569/833 (68%), Gaps = 10/833 (1%) Strand=Plus/Plus Query 116602 CCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGA 116661 ||||| || || ||||| || || |||| ||||| ||||| | |||||| || || Sbjct 1000295 CCGGTATGTCATGTTCCCGATTCAGTACCATGACATCTGGCGAAAGTACAAGGAGCAGGA 1000354 Query 116662 GGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCG 116721 | | | ||||| || || ||| | |||||| || || | | ||||||| | Sbjct 1000355 GAGCTGTATTTGGACGGTGGAAGAGATCGACCTGGGCAGCGATATGGTGGACTGGGTGAA 1000414 Query 116722 CTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGA 116781 ||||||| ||||| |||||||||||||||||||| || || ||||| | ||||| Sbjct 1000415 GCTGAACGATGGGGAGCGACATTTCATCAAGCACGTGCTTGCGTTCTTCGCGGGAAGCGA 1000474 Query 116782 CGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGC 116841 ||||||||||| |||||| || | |||| ||| ||| ||| | | | ||||| Sbjct 1000475 CGGCATCGTCATCGAGAACCTCGCGCAGCGCTTCATGACGGACGTGAAAATACCAGAGGC 1000534 Query 116842 GCGGTGC-TTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGA 116900 || |||| |||||||| |||||| | |||||||| | ||||| || | ||| ||| Sbjct 1000535 GC-GTGCGTTCTACGGGTTTCAGCTGATGATGGAGAATATTCACTCAGAGACGTACTCGG 1000593 Query 116901 CCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCG 116960 || | ||||||||| | | ||| |||||| | |||||| || |||| || Sbjct 1000594 TGCTGCTGGACACGTACATTATGGATCAGGATGAGAAGTTACGTTTGCTGCACGCGATTC 1000653 Query 116961 AGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAG 117020 ||||||| ||||| || || | |||||||||||||| | || ||||| || || | Sbjct 1000654 AGACGATTCCGTGTATCCAAAATAAGGCCGAGTGGGCTGTACGATGGAT---TGGGAGCG 1000710 Query 117021 AGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTC-G 117079 || | ||| ||||||||| | || || || || || ||||| |||||||||| | Sbjct 1000711 AGAGCAGTTTCCAGGAGCGCCTGATCGCGTTTGCAGCTGTGGAGGGTATCTTCTTTTCAG 1000770 Query 117080 GGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTC 117139 || ||| | || | || |||||||| || |||||| | ||||| || || || ||| Sbjct 1000771 GGTCATTTTG-TGCACTGTTCTGGCTCAAAAAGCGCGGCGTGATGCCTGGGCTAACCTTC 1000829 Query 117140 AGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTC 117199 |||||||| || ||||| | || ||||| |||| |||||||| |||||| ||| | Sbjct 1000830 AGCAACGAACTGATCTCGCGCGATGAGGGGTTGCACACGGACTTTGCGTGTTTGTTGTAC 1000889 Query 117200 AAGCATTTGGTGCAG--CGACCGAGCGCGG-CGCGCGTCAGGGAGATCGTCACCGACGCG 117256 || | || | | | | | ||| |||| || ||||||| |||| | ||| Sbjct 1000890 TCTCACCACATCAAGAACAAACTACCTCGGTCGCGTGTGCTGGAGATCATCACGAATGCG 1000949 Query 117257 GTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAAT 117316 || | ||||||||| || | ||| ||| |||| || ||| || | || | || Sbjct 1000950 GTGGACATCGAGCACGAGTTTATTTGCGATGCGTTGCCTGTACGTTTGATTGGGATGAAC 1001009 Query 117317 TGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTC 117376 | ||| |||| || ||||||||||| || || ||| | || || | | ||| | Sbjct 1001010 TCCGAGTTGATGGGACAGTACATCGAGTTTGTTGCGGACCGTCTTCTCATTGCGCTTGGT 1001069 Query 117377 GGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTC 117429 | | ||||| |||||| | | || ||| | ||||| ||| | | ||||| Sbjct 1001070 GAAGAAAAGCATTACAACGCTACAAATCCGTTCGACTTCATGGAGATGATCTC 1001122 >seq14 Length=332912 Score = 154 bits (170), Expect = 2e-32 Identities = 175/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||||||||| || ||||| || ||| | |||||||| || ||| | |||| ||||| || Sbjct 28074 AAAAATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCGCGCTCGAGGTCGAGGC 28133 Query 40746 CACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 || ||| | | | |||| | |||| || || | ||||| ||||| |||||| ||| Sbjct 28134 CAGCGATACGATCGACAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCCCCGG 28192 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 |||||||||| || || | ||||||||||||| |||| || | ||||| ||| ||| | Sbjct 28193 ACCAGCAACGCCTGATTTTCGCGGGCAAACAGTTGGAGGAGGGCCGCACGCTCGCCGATT 28252 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| |||| |||||| | || | || || | ||||| Sbjct 28253 ACAACATCCAGAAGGAATCCACCCTGCATTTGGTCCTCCGTCTGCGTGGCGG 28304 >seq7 Length=1072466 Score = 132 bits (146), Expect = 5e-26 Identities = 158/212 (75%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 40683 CCGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGA 40742 || ||||||||| || ||||| || ||| | |||||||| || ||| | |||| ||||| Sbjct 364277 CCAAAAAATGCAGATTTTCGTGAAGACGTTGACGGGCAAGACGATCGCGCTCGAGGTCGA 364218 Query 40743 AGCCACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCG 40801 |||| ||| | | || || | | |||| || |||| ||||| || |||||||| Sbjct 364217 GGCCAGCGATACGATTGACAATG-TGAAGGCGAAGATTCAGGACAAGGAAGGCATCCCTC 364159 Query 40802 CGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 40861 | ||||| || || || || | ||||||||| ||| |||| || | ||||| ||| || Sbjct 364158 CTGACCAACAGCGCCTGATTTTCGCGGGCAAGCAGTTGGAGGAGGGACGCACGCTCGCCG 364099 Query 40862 ACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 | ||||| ||||||||||| |||| |||||| Sbjct 364098 ATTACAATATCCAGAAGGAATCCACCCTGCAT 364067 >seq5 Length=1237164 Score = 109 bits (120), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || || || || || | | || || || || | | Sbjct 1116646 ATGCAGATCTTCGTGAAGACGCTAACAGGGAAGACAATAGCGCTTGAGGTAGAGGCTAGC 1116587 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| ||||| || ||| | ||||| Sbjct 1116586 GACACTATTGATAACG-TAAAGGCGAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCA 1116528 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | || ||||||||| |||| || | || || ||| ||||||||| Sbjct 1116527 GCAGCGGCTGATTTTTGCAGGCAAACAGTTGGAAGAGGGTCGTACTCTCGCCGACTACAA 1116468 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||| ||||| |||| |||||| | ||| | ||| | | |||||| Sbjct 1116467 CATCCAAAAGGAATCCACACTGCATTTGGTGCTTCGCCTACGTGGCGGC 1116419 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 40688 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA 40747 ||||||| || ||||| || || || || || || || || | |||| || || || | Sbjct 1116876 AAATGCAGATCTTCGTGAAGACACTAACAGGGAAGACAATAGCGCTCGAGGTAGAGGCTA 1116817 Query 40748 CCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 ||||| | | |||| | |||| || || | ||||| ||||| || ||| | ||| Sbjct 1116816 GCGACACTATTGATAACG-TAAAGGCGAAGATCCAAGACAAGGAGGGTATTCCCCCAGAC 1116758 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || || | || ||||||||| |||| || | || || ||| ||||||| Sbjct 1116757 CAGCAGCGGCTGATTTTTGCAGGCAAACAGTTGGAGGAGGGTCGTACTCTCGCCGACTAC 1116698 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| ||||| |||| |||||| | ||| | || || | || ||| Sbjct 1116697 AACATCCAAAAGGAATCCACACTGCATTTGGTGCTCCGTCTGCGTGGTGGC 1116647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218659019840