Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq5 120 5e-22 >seq5 Length=1237164 Score = 120 bits (132), Expect = 5e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | |||||||||||||| || || ||| | | ||| | || || | Sbjct 1116875 AATGCAGATCTTCGTGAAGACACTAACAGGGAAGACAATAGCGCTCGAGGTAGAGGCTAG 1116816 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| |||| ||| || ||||| || || ||||| || || || || Sbjct 1116815 CGACACTATTGATAACGTAAAGGCGAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCA 1116756 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||| ||||||||||| ||||| || ||||| |||| || | | || || || Sbjct 1116755 GCAGCGGCTGATTTTTGCAGGCAAACAGTTGGAGGAGGGTCGTACTCTCGCCGACTACAA 1116696 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| ||||| || |||||||||| | ||| | || ||||| || Sbjct 1116695 CATCCAAAAGGAATCCACACTGCATTTGGTGCTCCGTCTGCGTGGTGGCAT 1116645 Score = 105 bits (116), Expect = 1e-17 Identities = 166/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| |||||||| || || ||| | | ||| | || || | Sbjct 1116646 ATGCAGATCTTCGTGAAGACGCTAACAGGGAAGACAATAGCGCTTGAGGTAGAGGCTAGC 1116587 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| |||| ||| || ||||| || || ||||| || || || || Sbjct 1116586 GACACTATTGATAACGTAAAGGCGAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCAG 1116527 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || |||| ||||||||||| ||||| || || || |||| || | | || || || Sbjct 1116526 CAGCGGCTGATTTTTGCAGGCAAACAGTTGGAAGAGGGTCGTACTCTCGCCGACTACAAC 1116467 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAAT 124775 || ||||| ||||| || |||||||||| | || |||| || || ||||||| Sbjct 1116466 ATCCAAAAGGAATCCACACTGCATTTGGTGCTTCGCCTACGTGGCGG--CTAAAAAT 1116412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455206771200