Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq14 84.2 2e-11 seq7 84.2 2e-11 >seq14 Length=332912 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || || || || || |||||||||||| | ||||| ||||| Sbjct 28286 ACCAAATGCAGGGTGGATTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCCTCCTCC 28227 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | |||||| || ||| | || || || ||||| || || || || ||||||||||| Sbjct 28226 AACTGTTTGCCCGCGAAAATCAGGCGTTGCTGGTCCGGGGGGATCCCCTCCTTGTCCTGG 28167 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| || || || ||||||||||| | | ||| ||| Sbjct 28166 ATCTTCGCCTTCACGTTGTCGATCGTATCGCTGGCCTCGACCTCGAGCGCGATCGTCTTG 28107 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || || || || |||||||| Sbjct 28106 CCCGTCAACGTCTTCACGAAGATCTGCAT 28078 >seq7 Length=1072466 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || || || || || || ||||||||| | ||||| ||||| Sbjct 364062 ACCAAATGCAGGGTGGATTCCTTCTGGATATTGTAATCGGCGAGCGTGCGTCCCTCCTCC 364121 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | ||| || || ||| | || || ||||| || || ||||| ||||| |||||||| | Sbjct 364122 AACTGCTTGCCCGCGAAAATCAGGCGCTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGA 364181 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | || || || ||||||||||| | | ||| ||| Sbjct 364182 ATCTTCGCCTTCACATTGTCAATCGTATCGCTGGCCTCGACCTCGAGCGCGATCGTCTTG 364241 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || || || ||||||||||| Sbjct 364242 CCCGTCAACGTCTTCACGAAAATCTGCAT 364270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829955866128