Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq7 95.1 1e-14 seq5 95.1 1e-14 >seq7 Length=1072466 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| ||||| ||| |||||||| || ||||| ||| || ||| | || ||| Sbjct 364062 ACCAAATGCAGGGTGGATTCCTTCTGGATATTGTAATCGGCGAGCGTGCGTCCCTCCTCC 364121 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || || || ||||| |||| ||||||||||| ||||| | || ||||||||| | Sbjct 364122 AACTGCTTGCCCGCGAAAATCAGGCGCTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGA 364181 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | || | |||| ||||| | | ||||||||| Sbjct 364182 ATCTTCGCCTTCACATTGTCAATCGTATCGCTGGCCTCGACCTCGAGCGCGATCGTCTTG 364241 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 ||||||| |||||||| || || ||||| || Sbjct 364242 CCCGTCAACGTCTTCACGAAAATCTGCATTTT 364273 >seq5 Length=1237164 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| ||||| ||| ||||| || |||||||||||| || ||| | || ||| Sbjct 1116438 ACCAAATGCAGTGTGGATTCCTTTTGGATGTTGTAGTCGGCGAGAGTACGACCCTCTTCC 1116497 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||||| || || || |||| |||||| ||||| || || | |||||||||||| Sbjct 1116498 AACTGTTTGCCTGCAAAAATCAGCCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGG 1116557 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| | | |||| ||||| | | || ||||| Sbjct 1116558 ATCTTCGCCTTTACGTTATCAATAGTGTCGCTAGCCTCTACCTCAAGCGCTATTGTCTTC 1116617 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || |||||||| ||||| |||||| Sbjct 1116618 CCTGTTAGCGTCTTCACGAAGATCTGCATG 1116647 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| ||||| ||| ||||| || |||||||||||| || ||| | || ||| Sbjct 1116666 ACCAAATGCAGTGTGGATTCCTTTTGGATGTTGTAGTCGGCGAGAGTACGACCCTCCTCC 1116725 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||||| || || || |||| |||||| ||||| || || | |||||||||||| Sbjct 1116726 AACTGTTTGCCTGCAAAAATCAGCCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGG 1116785 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| | | |||| ||||| | | || ||||| Sbjct 1116786 ATCTTCGCCTTTACGTTATCAATAGTGTCGCTAGCCTCTACCTCGAGCGCTATTGTCTTC 1116845 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || |||||||| ||||| ||||| Sbjct 1116846 CCTGTTAGTGTCTTCACGAAGATCTGCAT 1116874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395074795541764