Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq8 237 1e-57 seq1 210 2e-49 seq14 93.3 4e-14 seq5 91.5 1e-13 seq7 87.8 2e-12 >seq8 Length=1060349 Score = 237 bits (262), Expect = 1e-57 Identities = 601/900 (67%), Gaps = 22/900 (2%) Strand=Plus/Plus Query 57542 TGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATC 57601 ||||||||| |||||| | || | ||||| ||| | |||||| || ||| || Sbjct 1000301 TGTCATGTTCCCGATTCAGTACCATGACATCTGGCGAAAGTACAAGGAG-CAGGAGAGCT 1000359 Query 57602 GT-TTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCA 57660 || ||||||| || ||||| | |||||| | ||| || || |||| || | Sbjct 1000360 GTATTTGGACGGTGGAAGAGATCGACCTGGGCAGCGATATGGTGGACTGGGTGAAGCTGA 1000419 Query 57661 AAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTA 57720 | || ||| || |||| || || |||||| | ||||| ||||| | | ||| || | Sbjct 1000420 ACGATGGGGAGCGACATTTCATCAAGCACGTGCTTGCGTTCTTCGCGGGAAGCGACGGCA 1000479 Query 57721 TTGTTAACGAGAATTTGGTCGAAAGATTTTCACAA--GAAGTGCAAGTGACGGAGGCGAG 57778 | || | |||||| | | || | | |||| | || ||| || | | |||||| | Sbjct 1000480 TCGTCATCGAGAACCTCG-CGCA-GCGCTTCATGACGGACGTGAAAATACCAGAGGCGCG 1000537 Query 57779 ATGCTTT-TACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTAC 57837 ||| || ||||| ||||| || || || || | || ||||| | ||| ||| | | Sbjct 1000538 -TGCGTTCTACGGGTTTCAGCTGATGATGGAGAATATTCACTCAGAGACGTACTCGGTGC 1000596 Query 57838 TCATCGATACGTACGTGAAGGACAACGACGAGAA---ACGTAGACTGTTCAACGCGATCG 57894 | | || |||||| | | ||| | || ||||| |||| ||| ||||||| Sbjct 1000597 TGCTGGACACGTACATTATGGATCAGGATGAGAAGTTACGTTTGCTGC---ACGCGATTC 1000653 Query 57895 AAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCA 57954 | || || || ||| || ||||| |||||| | | |||||| |||| | Sbjct 1000654 AGACGATTCCGTGTATCCAAAATAAGGCCGAGTGGGCTGTACGATGGATTGGGAGCGAGA 1000713 Query 57955 CGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGG 58014 || ||| ||| | || |||||||| || || || || ||||| |||||||| | Sbjct 1000714 G---CAGTTTCCAGGAGCGCCTGATCGCGTTTGCAGCTGTGGAGGGTATCTTCTTTTCAG 1000770 Query 58015 GCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTA 58074 | ||| ||| | || ||| | || || |||||| ||||||| || || || || | Sbjct 1000771 GGTCATTTTGTGCACTGTTCTGGCTCAAAAAGCGCGGCGTGATGCCTGGGCTAACCTTCA 1000830 Query 58075 GCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACT 58134 ||||||| |||| |||||||| ||||| | || || || |||||||| | |||||| Sbjct 1000831 GCAACGAACTGATCTCGCGCGATGAGGGGTTGCACACGGACTTTGCGTGTTTGTTGTACT 1000890 Query 58135 CTCACATTGTCAATAA--ACCGACGCGGGATCGCATCT--TGGACATTATCACCGAGGCG 58190 ||||| |||| || | | || || |||| | | |||| || ||||| | ||| Sbjct 1000891 CTCACCACATCAAGAACAAACTACCTCGG-TCGCGTGTGCTGGAGATCATCACGAATGCG 1000949 Query 58191 GTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAAC 58250 || | ||||| | |||||| | ||| || | || || || | || |||||| Sbjct 1000950 GTGGACATCGAGCACGAGTTTATTTGCGATGCGTTGCCTGTACGTTTGATTGGGATGAAC 1001009 Query 58251 AATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATT 58310 || |||||| | ||||||| ||||||||||| ||| | ||| | | | || | Sbjct 1001010 TCCGAGTTGATGGGACAGTACATCGAGTTTGTTGCGGACCGTCTTCTCATTGCGCTTGGT 1001069 Query 58311 GGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAG 58370 | ||| ||||||||| | | ||||||||| || || ||| | |||||||||| | Sbjct 1001070 GAAGAAAAGCATTACAACGCTACAAATCCGTTCGACTTCATGGAGATGATCTCGCTTCAA 1001129 Query 58371 GGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGC 58430 || ||||| ||||| ||||| || | ||| |||| ||||| ||| || ||||||||| Sbjct 1001130 GGAAAGACTAACTTCTTCGAGAAGAGGGTTGGCGAGTATCAGAAAGCTGGTGTGATGAGC 1001189 >seq1 Length=2329561 Score = 210 bits (232), Expect = 2e-49 Identities = 573/870 (66%), Gaps = 18/870 (2%) Strand=Plus/Minus Query 23020 GGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTC 23079 ||||| ||||| | |||||| || || || || ||| ||||| || |||||||| Sbjct 96299 GGCGAGGGAGGCCAAATTGCACACCGCTGTCTGCTCCGGGGATGTGTATTCCACAATTTC 96240 Query 23080 GGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCA 23139 |||||| | ||| || || ||||| || | | | ||||| ||||||||||| Sbjct 96239 GGTACACAAATTCGAGCATTTAATCGTCCCGATGTGTTTTTGGTTCGACTTTCGATTGCA 96180 Query 23140 CGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCG 23199 || || ||||||||||| | ||| |||||||||| || | ||| | ||||| Sbjct 96179 CGCGTCTTTGTAGAGCATAAAAGGCACCCCCGTCTCGATTTGGGTCTCCAAAATCGCAAA 96120 Query 23200 CCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTT-----CCTCGTACTTT 23254 ||||| ||| || |||| ||| || ||| || ||| |||| || || Sbjct 96119 CCACAGCTCCTGCGCCTGAA----TCGTGCGCACCC-CCATCTGACGCGCCTCATAACTT 96065 Query 23255 TGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGA 23314 | |||||| ||||| || | || ||||| ||| ||| || || | ||| Sbjct 96064 TTATACAACCGCTCAAACTCCTCCCCATAACAATCGCTCAGCCCCGGACAGGTGTGGGGA 96005 Query 23315 CACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCAT 23374 ||| | ||||| | || | | ||||| |||||||||||| |||||||| Sbjct 96004 TCCATCAACGTCCACGTCCCCTCGCTCTTCACGCGCTCCATAAAAAGATCAGGTATCCAA 95945 Query 23375 AGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCC 23434 || |||| || || || || || ||| ||||| || ||||||||| || || Sbjct 95944 AGCCCGTAAAAAAGATCACGCGCCCGCTGATCCTCCTTCCCGGTGTTCCGCTTTAACATG 95885 Query 23435 AAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTC 23494 | ||| || || | ||||||||||| ||||| || ||||| ||||| || || | Sbjct 95884 ACAAACTCGAAAATATCCGCATGCCAGGGCTCCAGATAAACCGCAAATGCCCCTTTGCGT 95825 Query 23495 TTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACG 23554 || || || |||||||| ||||| || ||||| || | || | ||||||||||| Sbjct 95824 TTGCCCCCTCCTTGATCGACATAACGTGCGGTGTTATTAAAAACCCGCAGCATCGGCACC 95765 Query 23555 AGACCGTTGGACGCGCCGCCTACG--CCCGCCACACTCGAACCTTTTGCTCGAACGTTGT 23612 | ||||| || | ||| | || || || | | || ||||||| ||||| Sbjct 95764 AACCCGTTCGAAGTTCCG--TTCGTCCCGGCGATATAACTTCCGGAGGCTCGAATGTTGT 95707 Query 23613 GAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGT 23672 ||||||| | || || || || | | || |||| ||||| | |||| ||||| Sbjct 95706 GAACGTGCAGTCCAATCCCCCCTGCTGCCTTGCTAATCACGGCGCACTCCTTCAAAGTGT 95647 Query 23673 CGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCG 23732 |||| || || || || |||||||| || |||| | || || || ||| ||| |||| Sbjct 95646 CGTAAATCCCTTCAATACTGTCCTCCTTCATCGCTATTAAAAAGCAGGAACTCATCTGCG 95587 Query 23733 CTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACA 23792 ||| || |||| |||| |||||| | ||||| || || | |||||||||| Sbjct 95586 GACGGGGGGTGCCGGCGTTAAACAACGTCGGGGTCGCGTGGGTGAAAAAGCCATTCGACA 95527 Query 23793 TTAGATTGTACGTGTCGATGGCGGC--ATCAATGTCCTCTCCGTGTATACCGATGGCGAC 23850 | | || ||| || ||| | | | |||| || | | ||||| || || | || || Sbjct 95526 TCAAATCGTAGGT-CCGA-GCCACCTTCTCAAGGTTCCCACCGTGAATCCCAAGCGCCAC 95469 Query 23851 GCGCATCATCATGTATTGAGGTCTCTCGAC 23880 |||| ||||| | || |||| ||| || Sbjct 95468 CCGCAAAATCATATGCTGGGGTCGCTCCAC 95439 >seq14 Length=332912 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || ||||| ||||| |||| ||||| |||||| | |||| || || | Sbjct 28074 AAAAATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCGCGCTCGAGGTCGAGGC 28133 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||| | |||| | || || || || ||||||||| || | || || || Sbjct 28134 CAGCGATACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCCCCGGA 28193 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 |||||| || || || ||||| |||||||||||||| || || | |||||| Sbjct 28194 CCAGCAACGCCTGATTTTCGCGGGCAAACAGTTGGAGGAGGGCCGCACGCTCGCCGATTA 28253 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || ||||| || || ||| |||| || | ||| | ||||| Sbjct 28254 CAACATCCAGAAGGAATCCACCCTGCATTTGGTCCTCCGTCTGCGTGGCGG 28304 >seq5 Length=1237164 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || ||||| || || || | | || || || | Sbjct 1116647 CATGCAGATCTTCGTGAAGACGCTAACAGGGAAGACAATAGCGCTTGAGGTAGAGGCTAG 1116588 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | | || | || || || || |||||||| || | || || ||||| Sbjct 1116587 CGACACTATTGATAACGTAAAGGCGAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCA 1116528 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || || ||||||||||||||||| | ||| | ||| || || Sbjct 1116527 GCAGCGGCTGATTTTTGCAGGCAAACAGTTGGAAGAGGGTCGTACTCTCGCCGACTACAA 1116468 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| ||||| ||||| || || ||| |||| ||| | || | ||||| Sbjct 1116467 CATCCAAAAGGAATCCACACTGCATTTGGTGCTTCGCCTACGTGGCGG 1116420 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || ||||| || || || | |||| || || | | Sbjct 1116874 ATGCAGATCTTCGTGAAGACACTAACAGGGAAGACAATAGCGCTCGAGGTAGAGGCTAGC 1116815 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | || || || || |||||||| || | || || |||||| Sbjct 1116814 GACACTATTGATAACGTAAAGGCGAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCAG 1116755 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || || |||||||||||||| || | ||| | ||| || ||| Sbjct 1116754 CAGCGGCTGATTTTTGCAGGCAAACAGTTGGAGGAGGGTCGTACTCTCGCCGACTACAAC 1116695 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || ||||| ||||| || || ||| |||| || Sbjct 1116694 ATCCAAAAGGAATCCACACTGCATTTGGTGCT 1116663 >seq7 Length=1072466 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| |||||||| ||||| |||| ||||| |||||| | |||| || || | Sbjct 364274 AAAAATGCAGATTTTCGTGAAGACGTTGACGGGCAAGACGATCGCGCTCGAGGTCGAGGC 364215 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||| | | || | || || || || ||||||||||||| | || || || Sbjct 364214 CAGCGATACGATTGACAATGTGAAGGCGAAGATTCAGGACAAGGAAGGCATCCCTCCTGA 364155 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||| ||||| || || ||||| ||||| |||||||| || || | |||||| Sbjct 364154 CCAACAGCGCCTGATTTTCGCGGGCAAGCAGTTGGAGGAGGGACGCACGCTCGCCGATTA 364095 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || ||||| || || ||| |||| || Sbjct 364094 CAATATCCAGAAGGAATCCACCCTGCATTTGGTCCT 364059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765931945280