Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1 116 5e-21 >seq1 Length=2329561 Score = 116 bits (128), Expect = 5e-21 Identities = 345/526 (66%), Gaps = 6/526 (1%) Strand=Plus/Minus Query 63178 TATACAATCGTTCGAACTCGTCTCCCCA-AACATTGTC-CAATCTAGGACATTCATCCGG 63235 ||||||| || || ||||| ||||||| |||| | | || | ||||| | || Sbjct 96063 TATACAACCGCTCAAACTC--CTCCCCATAACAATCGCTCAGCCCCGGACAGGTGTGGGG 96006 Query 63236 ACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA 63295 | |||||||| |||| || || |||||| || | |||||| |||||||| ||||| Sbjct 96005 ATCCATCAACGTCCACGTCCCCTCGCTCTTCACGCGCTCCATAAAAAGATCAGGTATCCA 95946 Query 63296 AAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTT-TTTAAGAT 63354 ||| | ||| ||||| | | | || ||||| || || || ||| ||||| || Sbjct 95945 AAGCCCGTAAAAAAGATCACGCGCCCGCTGATCCTCCTTCCCGGTGTTCCGCTTTAACAT 95886 Query 63355 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 63414 || ||| | | |||||| | |||||| || |||| || | || | | || | Sbjct 95885 -GACAAACTCGAAAATATCCGCATGCCAGGGCTCCAGATAAACCGCAAATGCCCCTTTGC 95827 Query 63415 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 63474 ||||| ||||| ||||| | || | |||||||||||| |||| | || ||| || | Sbjct 95826 GTTTGCCCCCTCCTTGATCGACATAACGTGCGGTGTTATTAAAAACCCGCAGCATCGGCA 95767 Query 63475 TAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTAC 63534 | ||||| || | || || || |||| |||||| | ||| ||| ||||| || Sbjct 95766 CCAACCCGTTCGAAGTTCCGTTCGTCCCGGCGATATAACTTCCGGAGGCTCGAATGTTGT 95707 Query 63535 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGT 63594 || || || || |||||||| || || | ||||| || || |||| Sbjct 95706 GAACGTGCAGTCCAATCCCCCCTGCTGCCTTGCTAATCACGGCGCACTCCTTCAAAGTGT 95647 Query 63595 CATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 63654 | || || ||||| || || || || |||| | || ||| ||| | ||| || Sbjct 95646 CGTAAATCCCTTCAATACTGTCCTCCTTCATCGCTATTAAAAAGCAGGAACTCATCTGCG 95587 Query 63655 GACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63700 |||| | || || || ||||| || || || | ||||| || || Sbjct 95586 GACGGGGGGTGCCGGCGTTAAACAACGTCGGGGTCGCGTGGGTGAA 95541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816938691520