Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1 111 2e-19 >seq1 Length=2329561 Score = 111 bits (122), Expect = 2e-19 Identities = 344/526 (65%), Gaps = 6/526 (1%) Strand=Plus/Minus Query 65971 TATACAATCGTTCGAACTCGTCTCCCCA-AACATTGTC-CAATCCAGGACATTCATCCGG 66028 ||||||| || || ||||| ||||||| |||| | | || || ||||| | || Sbjct 96063 TATACAACCGCTCAAACTC--CTCCCCATAACAATCGCTCAGCCCCGGACAGGTGTGGGG 96006 Query 66029 ACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA 66088 | |||||||| |||| || || |||||| || | |||||| |||||||| ||||| Sbjct 96005 ATCCATCAACGTCCACGTCCCCTCGCTCTTCACGCGCTCCATAAAAAGATCAGGTATCCA 95946 Query 66089 AAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTT-TTTAAGAT 66147 ||| | ||| | ||| | | | || ||||| || || || ||| ||||| || Sbjct 95945 AAGCCCGTAAAAAAGATCACGCGCCCGCTGATCCTCCTTCCCGGTGTTCCGCTTTAACAT 95886 Query 66148 CGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 66207 || ||| | | |||||| |||||| || |||| || | || | | || | Sbjct 95885 -GACAAACTCGAAAATATCCGCATGCCAGGGCTCCAGATAAACCGCAAATGCCCCTTTGC 95827 Query 66208 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 66267 ||||| ||||| ||||| | || | |||||||||||| |||| | || ||| || | Sbjct 95826 GTTTGCCCCCTCCTTGATCGACATAACGTGCGGTGTTATTAAAAACCCGCAGCATCGGCA 95767 Query 66268 TAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTAC 66327 | || || || || || || ||||||| |||||| ||||| || ||||| || Sbjct 95766 CCAACCCGTTCGAAGTTCCGTTCGTCCCGGCGATATAACTTCCGGAGGCTCGAATGTTGT 95707 Query 66328 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 66387 || || || || |||||||| || || | ||||| || || || | Sbjct 95706 GAACGTGCAGTCCAATCCCCCCTGCTGCCTTGCTAATCACGGCGCACTCCTTCAAAGTGT 95647 Query 66388 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 66447 | || || || || ||||| || ||| |||| | || ||| ||| | ||| || Sbjct 95646 CGTAAATCCCTTCAATACTGTCCTCCTTCATCGCTATTAAAAAGCAGGAACTCATCTGCG 95587 Query 66448 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 66493 |||| || || || ||||| || || || | ||||| || || Sbjct 95586 GACGGGGGGTGCCGGCGTTAAACAACGTCGGGGTCGCGTGGGTGAA 95541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172108918560