Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1 114 2e-20 seq8 91.5 2e-13 >seq1 Length=2329561 Score = 114 bits (126), Expect = 2e-20 Identities = 244/358 (68%), Gaps = 6/358 (2%) Strand=Plus/Minus Query 79850 TATATAATCGTTCGAACTCGTCTCCCCA-AACA-TCGTCTAATCCAGGACATTCGTCAGG 79907 |||| || || || ||||| ||||||| |||| ||| | || ||||| || || Sbjct 96063 TATACAACCGCTCAAACTC--CTCCCCATAACAATCGCTCAGCCCCGGACAGGTGTGGGG 96006 Query 79908 ACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCA 79967 | |||||||| |||| || || ||| || || | |||||| |||||||| ||||| Sbjct 96005 ATCCATCAACGTCCACGTCCCCTCGCTCTTCACGCGCTCCATAAAAAGATCAGGTATCCA 95946 Query 79968 AAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTT-TTTAAGAT 80026 ||| | ||| ||||| | | | || ||||| || || || ||| ||||| || Sbjct 95945 AAGCCCGTAAAAAAGATCACGCGCCCGCTGATCCTCCTTCCCGGTGTTCCGCTTTAACAT 95886 Query 80027 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTC 80086 || ||| | | |||||| | |||||| || |||| || | || | | || | Sbjct 95885 -GACAAACTCGAAAATATCCGCATGCCAGGGCTCCAGATAAACCGCAAATGCCCCTTTGC 95827 Query 80087 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 80146 ||||| ||||| ||||| | || | |||||||||||| |||| | || ||| || | Sbjct 95826 GTTTGCCCCCTCCTTGATCGACATAACGTGCGGTGTTATTAAAAACCCGCAGCATCGGCA 95767 Query 80147 TAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT 80204 | || || || || || || ||||||| |||||| ||||| ||| ||||| || Sbjct 95766 CCAACCCGTTCGAAGTTCCGTTCGTCCCGGCGATATAACTTCCGGAGGCTCGAATGTT 95709 >seq8 Length=1060349 Score = 91.5 bits (100), Expect = 2e-13 Identities = 164/236 (69%), Gaps = 8/236 (3%) Strand=Plus/Minus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| |||||| || || || ||||| ||||| || | || ||||||||| | Sbjct 1000887 ACAACAAACACGCAAAGTCCGTGTGCAACCCCTCATCGCGCGAGATCAGTTCGTTGCTGA 1000828 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA-TGGACGCAAATGACCCA 50070 | || || || ||||| | ||| |||||||| ||||| || | || || ||||||||| Sbjct 1000827 AGGTTAGCCCAGGCATCACGCCGCGCTTTTTGAGCCAGAACAGTGCACA-AAATGACCCT 1000769 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG---GCG 50127 ||||||||||| || || || || ||||| || | || | ||| ||||| || Sbjct 1000768 GAAAAGAAGATACCCTCCACAGCTGCAAACGCGATCAGGCGCTCCTGGAAACTGCTCTCG 1000709 Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT 50183 || || ||||| | |||||| |||||||| |||| | ||| || ||||| Sbjct 1000708 CTCCCA---ATCCATCGTACAGCCCACTCGGCCTTATTTTGGATACACGGAATCGT 1000656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268045817760