Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq5 89.7 5e-13 seq14 84.2 2e-11 seq4 82.4 7e-11 >seq5 Length=1237164 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 |||||| |||| || ||||||||||| | ||| || ||| | ||| || || Sbjct 1116437 CACCAAATGCAGTGTGGATTCCTTTTGGATGTTGTAGTCGGCGAGAGTACGACCCTCTTC 1116496 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || |||||| || |||| || | | ||||| ||||| |||||||| || ||||| | Sbjct 1116497 CAACTGTTTGCCTGCAAAAATCAGCCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTG 1116556 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTT 94976 || || ||||| ||| | | |||||| || | || || |||| || || || | Sbjct 1116557 GATCTTCGCCTTTACGTTATCAATAGTGTC-GCTAGCCTCTACCTCAAGCGCTATTGTCT 1116615 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || || || || ||||| ||||||||||||| Sbjct 1116616 TCCCTGTTAGCGTCTTCACGAAGATCTGCATGC 1116648 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 |||||| |||| || ||||||||||| | ||| || ||| | ||| ||||| Sbjct 1116665 CACCAAATGCAGTGTGGATTCCTTTTGGATGTTGTAGTCGGCGAGAGTACGACCCTCCTC 1116724 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || |||||| || |||| || | | ||||| ||||| |||||||| || ||||| | Sbjct 1116725 CAACTGTTTGCCTGCAAAAATCAGCCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTG 1116784 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG-GTCGACGTCAATCGTGATGGTTT 94976 || || ||||| ||| | | |||||| || | || || || | || || || | Sbjct 1116785 GATCTTCGCCTTTACGTTATCAATAGTGTC-GCTAGCCTCTACCTCGAGCGCTATTGTCT 1116843 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || || ||||| ||||||||||| Sbjct 1116844 TCCCTGTTAGTGTCTTCACGAAGATCTGCAT 1116874 >seq14 Length=332912 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/219 (69%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| |||| || |||||||| || | ||| |||||| | ||| | |||||| Sbjct 28286 ACCAAATGCAGGGTGGATTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCCTCCTCC 28227 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | |||||| || | || || | | |||||| || || || || || || ||||| | Sbjct 28226 AACTGTTTGCCCGCGAAAATCAGGCGTTGCTGGTCCGGGGGGATCCCCTCCTTGTCCTGG 28167 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGACGTCAATCGTGATGGTTT 94976 || || ||||| ||| | ||| || || || ||| ||||| || | || ||| || | Sbjct 28166 ATCTTCGCCTTCACGTTGTCGATCGTATC-GC-TGGCCTCGACCTCGAGCGCGATCGTCT 28109 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTACAA 95015 | || || | || ||||| ||||||||||| ||| || Sbjct 28108 TGCCCGTCAACGTCTTCACGAAGATCTGCATTTTTATAA 28070 >seq4 Length=1647180 Score = 82.4 bits (90), Expect = 7e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 115617 GGTGAGGATCGAACTCACAACCTTGGCATTATAAGTACCACGCGCTGCCGATTGCGCTAC 115676 |||||||||||||||||| ||||||| ||||| || |||||||||||||| |||||||| Sbjct 394249 GGTGAGGATCGAACTCACGACCTTGGGATTATGAGACCCACGCGCTGCCGACTGCGCTAC 394190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290729294240