Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1 116 5e-21 seq8 82.4 1e-10 >seq1 Length=2329561 Score = 116 bits (128), Expect = 5e-21 Identities = 345/526 (66%), Gaps = 6/526 (1%) Strand=Plus/Minus Query 63127 TATACAATCGTTCGAACTCGTCTCCCCA-AACATTGTC-CAATCCAGGACATTCATCCGG 63184 ||||||| || || ||||| ||||||| |||| | | || || ||||| | || Sbjct 96063 TATACAACCGCTCAAACTC--CTCCCCATAACAATCGCTCAGCCCCGGACAGGTGTGGGG 96006 Query 63185 ACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA 63244 | |||||||| |||| || || |||||| || | |||||| |||||||| ||||| Sbjct 96005 ATCCATCAACGTCCACGTCCCCTCGCTCTTCACGCGCTCCATAAAAAGATCAGGTATCCA 95946 Query 63245 AAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTT-TTTAAGAT 63303 ||| | ||| ||||| | | | || ||||| || || || ||| ||||| || Sbjct 95945 AAGCCCGTAAAAAAGATCACGCGCCCGCTGATCCTCCTTCCCGGTGTTCCGCTTTAACAT 95886 Query 63304 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 63363 || ||| | | |||||| | |||||| || |||| || | || | | || | Sbjct 95885 -GACAAACTCGAAAATATCCGCATGCCAGGGCTCCAGATAAACCGCAAATGCCCCTTTGC 95827 Query 63364 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 63423 ||||| ||||| ||||| | || | |||||||||||| |||| | || ||| || | Sbjct 95826 GTTTGCCCCCTCCTTGATCGACATAACGTGCGGTGTTATTAAAAACCCGCAGCATCGGCA 95767 Query 63424 TAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTAC 63483 | ||||| || | || || || |||| |||||| ||||| ||| ||||| || Sbjct 95766 CCAACCCGTTCGAAGTTCCGTTCGTCCCGGCGATATAACTTCCGGAGGCTCGAATGTTGT 95707 Query 63484 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGT 63543 || || || || |||||||| || || | ||||| || || |||| Sbjct 95706 GAACGTGCAGTCCAATCCCCCCTGCTGCCTTGCTAATCACGGCGCACTCCTTCAAAGTGT 95647 Query 63544 CATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 63603 | || || || || || || || || |||| | || ||| ||| | ||| || Sbjct 95646 CGTAAATCCCTTCAATACTGTCCTCCTTCATCGCTATTAAAAAGCAGGAACTCATCTGCG 95587 Query 63604 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63649 |||| || || || ||||| || || || | ||||| || || Sbjct 95586 GACGGGGGGTGCCGGCGTTAAACAACGTCGGGGTCGCGTGGGTGAA 95541 >seq8 Length=1060349 Score = 82.4 bits (90), Expect = 1e-10 Identities = 160/235 (68%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| |||||| || || || ||||| ||||| || | || ||||||||| | Sbjct 1000887 ACAACAAACACGCAAAGTCCGTGTGCAACCCCTCATCGCGCGAGATCAGTTCGTTGCTGA 1000828 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | || || || ||||| | ||| |||||||| ||||| || | | | ||||| || | Sbjct 1000827 AGGTTAGCCCAGGCATCACGCCGCGCTTTTTGAGCCAGAACAGTGCACAAAATGACCCTG 1000768 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCG---GCGC 33472 |||||||||| || || || || ||||| || || || | ||| ||| | ||| Sbjct 1000767 AAAAGAAGATACCCTCCACAGCTGCAAACGCGATCAGGCGCTCCTGGAAACTGCTCTCGC 1000708 Query 33473 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT 33527 | || ||||| | |||||| |||||||| |||| | ||| || ||||| Sbjct 1000707 TCCCA---ATCCATCGTACAGCCCACTCGGCCTTATTTTGGATACACGGAATCGT 1000656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946545905440