Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 1e-15 seq8 84.2 2e-11 >seq1 Length=2329561 Score = 98.7 bits (108), Expect = 1e-15 Identities = 302/459 (66%), Gaps = 11/459 (2%) Strand=Plus/Minus Query 148248 GCCTCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCATAGCAATCGTTTAAACCGGGA 148307 ||||| ||| ||| || | ||| || || | ||||| |||||| | | || ||| Sbjct 96076 GCCTCATAACTTTTATACAACCGCTCAAACTCCTCCCCATAACAATCGCTCAGCCCCGGA 96017 Query 148308 CACTCGTCGGGGCACATCAATGACCATTTCCCTCCTGTCTTTACCCTCTTCATAAACAGA 148367 || || ||| |||||| | ||| |||| | |||| || | || |||||| ||| Sbjct 96016 CAGGTGTGGGGATCCATCAACGTCCACGTCCCCTCGCTCTTCACGCGCTCCATAAAAAGA 95957 Query 148368 TCAGGTGTCCACATGGCAAAAAGAAGATCGCGAGCCTTCATATCCTCGGCACCCATATTG 148427 |||||| |||| | | ||| |||||| || ||| | |||||| || | || Sbjct 95956 TCAGGTATCCAAAGCCCGTAAAAAAGATCACGCGCCCGCTGATCCTCCTTCCCGGTGTTC 95897 Query 148428 CGCTTTAGATCCaaaaaagtaaaaaCGTCTGCGTGCCAAGGCTCGATGTATACGGTCATG 148487 ||||||| | ||| |||| || || ||||| ||||| | || || | | Sbjct 95896 CGCTTTAACATGACAAACTCGAAAATATCCGCATGCCAGGGCTCCAGATAAACCGCAAAT 95837 Query 148488 GCGCCTTTCCTTTTACC---TCCTTGATCGACATGGCGTAGCATGCTATTAAAAACACGC 148544 || ||||| | ||| || |||||||||||||| ||| || |||||||||| ||| Sbjct 95836 GCCCCTTTGCGTTTGCCCCCTCCTTGATCGACATAACGTGCGGTGTTATTAAAAACCCGC 95777 Query 148545 AATGCA--GGTCCCAATCCCGCCGCAGTTCCGTTTGTGGATTCAATTTTACTATTGGTGG 148602 | ||| || |||| || || ||||||||| || | || | ||| || || Sbjct 95776 A--GCATCGGCACCAACCCGTTCGAAGTTCCGTTCGTCCCGGCGATATAACTTCCGGAGG 95719 Query 148603 CGCGAAT-TTGAGTGACATTCAGGCCGATGCCGCCTCCGTGTTTAGAT-ATCATGGCACA 148660 | ||||| ||| | || | ||| || || || ||| | || | | | |||| ||| || Sbjct 95718 CTCGAATGTTGTG-AACGTGCAGTCCAATCCCCCCTGC-TGCCTTGCTAATCACGGCGCA 95661 Query 148661 ATCGTTGAGTGTTTTATAGATGCCGTTAATACTGTCCTC 148699 || || | || | || || || | |||||||||||| Sbjct 95660 CTCCTTCAAAGTGTCGTAAATCCCTTCAATACTGTCCTC 95622 >seq8 Length=1060349 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 119646 TACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATTCATA 119705 |||||||| || | || || || || |||||||| || | ||| || || | | ||| Sbjct 1001167 TACTCGCCAACCCTCTTCTCGAAGAAGTTAGTCTTTCCTTGAAGCGAGATCATCTCCATG 1001108 Query 119706 AACTCGAAAGGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAGTCGA 119765 || ||||| ||||||| || |||| ||||||| || | || | | | | | || || Sbjct 1001107 AAGTCGAACGGATTTGTAGCGTTGTAATGCTTTTCTTCACCAAGCGCAATGAGAAGACGG 1001048 Query 119766 TCTGCCACAAACTCGATGTATTCGCACATGGATTGCGAATTCATGCCCAACATAGCGACC 119825 || || |||||||||||||| | | ||| | | || ||||| || | || | || Sbjct 1001047 TCCGCAACAAACTCGATGTACTGTCCCATCAACTCGGAGTTCATCCCAATCAAACGTACA 1000988 Query 119826 GGTAAAGCATTGGTAAAGAAATCCTTTTCAATGTCGACCGC 119866 || || |||| | || || || | || ||||| ||||| Sbjct 1000987 GGCAACGCATCGCAAATAAACTCGTGCTCGATGTCCACCGC 1000947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478661897404480