Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq8 174 4e-38 seq1 163 7e-35 >seq8 Length=1060349 Score = 174 bits (192), Expect = 4e-38 Identities = 371/546 (68%), Gaps = 10/546 (2%) Strand=Plus/Plus Query 22410 CGCGATTCGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGAT--- 22466 |||||||| || |||| | || | |||||||| || ||||| | |||||| Sbjct 1000646 CGCGATTCAGACGATTCCGTGTATCCAAAATAAGGCCGAGTGGGCTGTACGATGGATTGG 1000705 Query 22467 GAACAATGAACGTTCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTT 22526 || | | || | | ||| ||| || || || || ||||| | || || || || || Sbjct 1000706 GAGCGA-GAGCAGT--TTCCAGGAGCGCCTGATCGCGTTTGCAGCTGTGGAGGGTATCTT 1000762 Query 22527 CTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCT 22586 |||||| || ||||||||||| | || ||||| ||||| || | | ||||| || || Sbjct 1000763 CTTTTCAGGGTCATTTTGTGCACTGTTCTGGCTCAAAAAGCGCGGCGTGATGCCTGGGCT 1000822 Query 22587 AACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTAT 22646 ||| || || || | || || |||||||| | || || || ||||||||| | Sbjct 1000823 AACCTTCAGCAACGAACTGATCTCGCGCGATGAGGGGTTGCACACGGACTTTGCGTGTTT 1000882 Query 22647 GCTATATCGGAATCATATCATTCATAAACTTCCATATGAAAC-TGTACTTGATATTATTA 22705 | | || | || |||| | ||||| || | | | ||| || || || || | Sbjct 1000883 GTTGTACTCTCACCACATCAAGAACAAACTACC-TCGGTCGCGTGTGCTGGAGATCATCA 1000941 Query 22706 CAAATGCAGTTGAACTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTG 22765 | ||||| || || | || | ||||||||||| ||||| || ||| || | |||| Sbjct 1000942 CGAATGCGGTGGACATCGAGCACGAGTTTATTTGCGATGCGTTGCCTGTACGTTTGATTG 1001001 Query 22766 GTATCAATGCCGAATCAATGAGTACA-TATATTAAATTTGTTGCAGATCGTCTATTAATT 22824 | || || |||| | ||| | ||| || || | |||||||| || ||||| | ||| Sbjct 1001002 GGATGAACTCCGAGTTGATG-GGACAGTACATCGAGTTTGTTGCGGACCGTCTTCTCATT 1001060 Query 22825 TCACTCGGTTATGCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATT 22884 | || ||| | | ||||||||| |||| ||||| || || | ||||| | || Sbjct 1001061 GCGCTTGGTGAAGAAAAGCATTACAACGCTACAAATCCGTTCGACTTCATGGAGATGATC 1001120 Query 22885 TCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGT 22944 || ||| |||||||||| || |||||||| || || ||||| || || || ||||| ||| Sbjct 1001121 TCGCTTCAAGGAAAGACTAACTTCTTCGAGAAGAGGGTTGGCGAGTATCAGAAAGCTGGT 1001180 Query 22945 GTTATG 22950 || ||| Sbjct 1001181 GTGATG 1001186 >seq1 Length=2329561 Score = 163 bits (180), Expect = 7e-35 Identities = 515/783 (66%), Gaps = 20/783 (3%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| ||||| || || || ||| || || || || | ||| |||||| ||| Sbjct 95541 TTCACCCACGCGACCCCGACGTTGTTTAACGCCGGCACCCCCCGTCCGCAGATGAGTTCC 95600 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 |||||| | || |||||||| || || || || || | ||||| | ||| | Sbjct 95601 TGCTTTTTAATAGCGATGAAGGAGGACAGTATTGAAGGGATTTACGACACTTTGAAGGAG 95660 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGG--TGTATCGATCCACAATGTTCGTG 363724 || || | ||| |||| ||||| || ||||| || | || || |||| |||| | Sbjct 95661 TGCGCCGTGATTAGCAAGGCAGCAGGGGGGATTGGACTGCA-CGTTC-ACAACATTCGAG 95718 Query 363725 CA-CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTT 363783 | | | | ||||| || ||| || ||| ||||| ||| |||| || ||||| Sbjct 95719 CCTCCGGA-AGTTATATCGCCGGGACGAACGGAACTTCGAACGGGTTGGTGCCGATGCTG 95777 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCG 363843 || || ||| | || || || | || ||||| || || || || || ||||||||||| Sbjct 95778 CGGGTTTTTAATAACACCGCACGTTATGTCGATCAAGGAGGGGGCAAACGCAAAGGGGCA 95837 Query 363844 TTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA 363903 ||||| | ||||| ||||| ||||| |||||||| |||||| | | | | Sbjct 95838 TTTGCGGTTTATCTGGAGCCCTGGCATGCGGATATTTTCGAGTTTGTCATGTTAAAGCGG 95897 Query 363904 AACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGAC 363963 ||||| || || ||||| ||| || |||||||| || || | |||||| | |||| Sbjct 95898 AACACCGGGAAGGAGGATCAGCGGGCGCGTGATCTTTTTTACGGGCTTTGGATACCTGAT 95957 Query 363964 CATTTTATGAAGCGCGTG--GAGGCAGGTAAGAATTGGTCACTCTT--TTGCCCACACGA 364019 | ||||||| |||||||| ||| ||| || ||| | | | | ||||||| Sbjct 95958 CTTTTTATGGAGCGCGTGAAGAGCGAGG--GGACGTGGACGTTGATGGATCCCCACAC-- 96013 Query 364020 ATGTCCAGGTCTTTCCGAT--GTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTAT 364077 ||||| || || |||| ||||||| | | | | | | |||| ||| ||| Sbjct 96014 CTGTCCGGGGCTGAGCGATTGTTATGGGGAGGAGTTTGAGCGGTTGTATA--AAAGTTAT 96071 Query 364078 GAATCGGAGGGAAAGGCTCGTAAG-ACAATTCCCGCACAGAAGCTATGGTTTGCCATCAT 364136 || | | | | | | || | || |||| || ||| |||| |||||||| || | Sbjct 96072 GAGGC-GCGTCAGATGGGGGTGCGCACGATTCAGGCGCAGGAGCTGTGGTTTGCGATTTT 96130 Query 364137 GGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAA 364196 ||| | || || ||||| || || | |||| | |||||||| ||||||| || || Sbjct 96131 GGAGACCCAAATCGAGACGGGGGTGCCTTTTATGCTCTACAAAGACGCGTGCAATCGAAA 96190 Query 364197 GTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGA 364256 ||| ||||| | ||| | || || ||| | || | |||||||| ||| | || Sbjct 96191 GTCGAACCAAAAACACATCGGGACGATTAAATGCTCGAATTTGTGTACCGAAATTGTGGA 96250 Query 364257 ATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTT 364316 |||||| | || || |||| || || || || | || || |||| || ||| ||| Sbjct 96251 ATACACATCCCCGGAGCAGACAGCGGTGTGCAATTTGGCCTCCCTCGCCCTGCCGCGGTT 96310 Query 364317 TGT 364319 ||| Sbjct 96311 TGT 96313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303352197265688