Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq8 122 8e-23 seq1 122 8e-23 seq7 113 4e-20 seq14 104 2e-17 seq5 102 8e-17 >seq8 Length=1060349 Score = 122 bits (134), Expect = 8e-23 Identities = 303/451 (67%), Gaps = 8/451 (2%) Strand=Plus/Plus Query 46153 GAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGG--CAGTTTTGCCG 46210 ||||| || | || ||||| ||||||||| |||| ||||| || || ||||| | Sbjct 1000725 GAGCGCCTGATCGCGTTTGCAGCTGTGGAGGGTATCTTCTTTTCAGGGTCA-TTTTGT-G 1000782 Query 46211 CCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGA 46270 | | || | |||||| ||| | ||||| || || || || |||||||| |||| Sbjct 1000783 CACTGTTCTGGCTCAAAAAGCGCGGCGTGATGCCTGGGCTAACCTTCAGCAACGAACTGA 1000842 Query 46271 TATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTA-TAACACTCGCGTG 46329 | |||||||| ||||| |||| ||||||||||||||| | | || | ||| | | | Sbjct 1000843 TCTCGCGCGATGAGGGGTTGCACACGGACTTTGCGTGTTTGTTGTACTCTCAC-CACATC 1000901 Query 46330 CACGACAAGCTTGCGCCCGACAC-CGTGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGA 46388 | |||| | | | | | | | |||||| || ||| | | ||||||| ||| || Sbjct 1000902 AAGAACAAAC-TACCTCGGTCGCGTGTGCTGGAGATCATCACGAATGCGGTGGACATCGA 1000960 Query 46389 GAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTCAAT 46448 | | |||||| || | || |||| | || | || |||||| | ||| || Sbjct 1000961 GCACGAGTTTATTTGCGATGCGTTGCCTGTACGTTTGATTGGGATGAACTCCGAGTTGAT 1001020 Query 46449 GTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGCCGAAGCA 46508 | | | |||||||||||||| |||||||| || ||| | |||| | ||||| Sbjct 1001021 GGGACAGTACATCGAGTTTGTTGCGGACCGTCTTCTCATTGCGCTTGGTGAAGAAAAGCA 1001080 Query 46509 TTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAA 46568 || |||| ||||| || || || ||| | | ||||| || | || || ||||| Sbjct 1001081 TTACAACGCTACAAATCCGTTCGACTTCATGGAGATGATCTCGCTTCAAGGAAAGACTAA 1001140 Query 46569 TTTTTTCGAAAAGCGCGTCGGCGAGTATAAG 46599 || ||||| ||| | || ||||||||| || Sbjct 1001141 CTTCTTCGAGAAGAGGGTTGGCGAGTATCAG 1001171 >seq1 Length=2329561 Score = 122 bits (134), Expect = 8e-23 Identities = 717/1123 (64%), Gaps = 48/1123 (4%) Strand=Plus/Minus Query 145057 ATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGG 145116 ||| || || ||||||| || ||||| ||||| | || | || || || || || Sbjct 96869 ATTTACCACGGGAAACTCCCCACTTAACACCCGACGAAGGTAAATATTCGAGGTAAATGG 96810 Query 145117 TTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCAC 145176 |||| | | || |||||||||| ||||| | ||||| ||||| ||||| |||| Sbjct 96809 CTCAATACATTCATTATTGCCCAAAATTTGCGAGGTCGAGGCGGTTGGCATAGGGGCCAA 96750 Query 145177 CAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCA 145236 ||| || |||||||||| |||| ||| | | |||||| || | |||||||||| Sbjct 96749 CAACAAGGAATTGCGCATGCCGGAGACCTTAAGCCGTGCCTTTAACGCATCCCAATCCCA 96690 Query 145237 TAGCGAAGTCG---GCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGG 145293 | || ||| | | |||| | || ||||||| || |||| | || || Sbjct 96689 TCGCCCGCTCGTTGGTTTTTTCCCCCAAAGATCAAACTGCAAGATCCCCTGGGCCGCCGG 96630 Query 145294 GCTGCCTT-GAAA--GGAACTGTAACTGCC--CCAAGTTTTGGCGAGCTCGCAACTCG-C 145347 ||| | |||| || | ||||| || ||| | | ||||| || || | | | Sbjct 96629 GCTTTGGTCGAAATCGGTA---TAACTCCCTTCCA--TCTCCGCGAGATC-CACCGAGGC 96576 Query 145348 CTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATC 145407 ||| | | | || |||| || || ||| |||| | || | | |||||| || Sbjct 96575 CTCGACCGAGGCGTAATAGATGGTTTCGAAGATTTCCTCATTCAACCGCATCGACTCGG- 96517 Query 145408 GCTCTCGTACGGCATG-CGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGC 145466 |||| | || || || ||||| | ||||| |||||| |||||||| | || | | Sbjct 96516 GCTCAGTAAAGGTCTGGCGAAGCAGAATAAAAGTATCGGCAAGCCCCTGGACGCCTATCC 96457 Query 145467 CGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATA-TCG--ATTAC 145523 |||| || |||| ||||| |||||| || ||||| ||| | || || | | |||| Sbjct 96456 CGATCGGGCGATAATTCATATTGCTCCGCCGCGCCGTCTCCACTGGGTAGTAGGAATTA- 96398 Query 145524 GGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAA 145583 || |||| ||| | ||| || |||| || | | | | || | Sbjct 96397 --TCAATAACGCGATTAAGGTTGTAGGTGACCTCCTTCGTGACCTCGTAGAGCAGTTGAT 96340 Query 145584 AGTCAAAC-CGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTA 145642 || || | || || || ||| ||||| | | | ||||| || |||||||| Sbjct 96339 GGTTGAAGACTTGCTTC-TCGACGTCCACAAACCGCGGCAGGGCGAGGGAGGCCAAATTG 96281 Query 145643 CAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACAT 145702 || || || |||| ||| | | |||||| || || |||| |||||||| ||| Sbjct 96280 CACACCGCTGTCTGCTCCGGGGATGTGTATTCCACAATTTCGGTACACAAATTCGAGCAT 96221 Query 145703 TTGATGGTTCCCAGATTTTGCTGATT--ACTTTTCCTGTTGCACGCGTCCTTGTAGAGCA 145760 || || || || | | || || || ||||| | ||||||||||| |||||||||| Sbjct 96220 TTAATCGTCCCGATGTGTTTTTGGTTCGACTTT--CGATTGCACGCGTCTTTGTAGAGCA 96163 Query 145761 TGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATA--AAACGGTGCAAGTCCTGCGC 145818 | | || | || ||||| | || ||||||| || |||| || |||||||| Sbjct 96162 TAAAAGGCACCCCCGTCTCGATTTGGGTCTCCAAAATCGCAAACCA--CAGCTCCTGCGC 96105 Query 145819 ACGCACCTGCTGCTGGTAGCGGCCCTCTT-----CTTCGTATTTCCTGTAGAGCTCCTCA 145873 | | | ||| | | | || ||| | || || | | || | | |||| Sbjct 96104 CTGAATCG--TGC--GCACCC-CCATCTGACGCGCCTCATAACTTTTATACAACCGCTCA 96050 Query 145874 AACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCAT 145933 ||| | || || |||||| ||| || ||||| ||| |||| ||||| || ||| Sbjct 96049 AACTCCTCCCCATAACAATCGCTCAGCCCCGGACAGGTGTGGGGATCCATCAACGTCCAC 95990 Query 145934 ACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAG 145993 || | | || |||||||||||||| | ||| || | ||| ||| |||| | | Sbjct 95989 GTCCCCTCGCTCTTCACGCGCTCCATAAAAAGATCAGGTATCCAAAGCCCGTAAAAAAGA 95930 Query 145994 TCGCGCGCTTTGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACT-ATAGAT 146052 || ||||| |||||| || |||| ||||| || | | || ||| | || Sbjct 95929 TCACGCGCCCGCTGATCCTCCTTCCCGGTGTTCCGCTTTAACATGA-CAAACTCGAAAAT 95871 Query 146053 GTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCACCCTG 146109 ||||| ||||| || || | ||| || || | || ||||| |||||| || || || Sbjct 95870 ATCCGCATGCCAGGGCTCCAGATAAACCGCAAATGCCCCTTTGCGTTTGCCCCCTCCTTG 95811 Query 146110 GTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGC 146152 || || | |||| | |||| ||||| || |||| ||| ||| Sbjct 95810 ATCGACATAACGTGCGGTGTTATTAAAAACCCGCAGCATCGGC 95768 >seq7 Length=1072466 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||||| ||| || || ||||| | ||| || ||||| || || ||||||||| Sbjct 364044 CCCCCGCGCAGACGGAGGACCAAATGCAGGGTGGATTCCTTCTGGATATTGTAATCGGCG 364103 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| | ||||||||| ||| | || | ||||| ||||| |||||| Sbjct 364104 AGCGTGCGTCCCTCCTCCAACTGCTTGCCCGCGAAAATCAGGCGCTGTTGGTCAGGAGGG 364163 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || ||| ||| | | || | |||||| ||| ||||| Sbjct 364164 ATGCCTTCCTTGTCCTGAATCTTCGCCTTCACATTGTCAATCGTATCGCTGGCCTCGACC 364223 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| | | || || || || | || || |||||||||||||| Sbjct 364224 TCGAGCGCGATCGTCTTGCCCGTCAACGTCTTCACGAAAATCTGCAT 364270 >seq14 Length=332912 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||| || || ||||| | ||| || ||||| || |||||||||||| Sbjct 28304 CCGCCACGCAGACGGAGGACCAAATGCAGGGTGGATTCCTTCTGGATGTTGTAATCGGCG 28245 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| | ||| ||||| ||| | || | || ||||||||||| ||| Sbjct 28244 AGCGTGCGGCCCTCCTCCAACTGTTTGCCCGCGAAAATCAGGCGTTGCTGGTCCGGGGGG 28185 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||| | | || | |||||| ||| ||||| Sbjct 28184 ATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATCGTATCGCTGGCCTCGACC 28125 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| | | || || || || | || || ||||| |||||||| Sbjct 28124 TCGAGCGCGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCAT 28078 >seq5 Length=1237164 Score = 102 bits (112), Expect = 8e-17 Identities = 166/238 (70%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||| ||||| ||||| | || || |||||||| |||||||| ||| Sbjct 1116647 GCCACCACGCAGACGGAGCACCAAATGCAGTGTGGATTCCTTTTGGATGTTGTAGTCGGC 1116706 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || ||||| | ||| |||||||| | || | ||||||||||| || || Sbjct 1116707 GAGAGTACGACCCTCCTCCAACTGTTTGCCTGCAAAAATCAGCCGCTGCTGGTCTGGGGG 1116766 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| ||| ||| | | || | ||| ||| | | ||| | Sbjct 1116767 AATACCCTCCTTGTCTTGGATCTTCGCCTTTACGTTATCAATAGTGTCGCTAGCCTCTAC 1116826 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCA-TGACTTATTT 131243 |||| | | || || || ||||| || || ||||| ||||||| | ||||||| Sbjct 1116827 CTCGAGCGCTATTGTCTTCCCTGTTAGTGTCTTCACGAAGATCTGCATTTCCTTATTT 1116884 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 |||| || || | || ||||| ||||| | || || |||||||| |||||||| ||| Sbjct 1116418 AGCCGCCACGTAGGCGAAGCACCAAATGCAGTGTGGATTCCTTTTGGATGTTGTAGTCGG 1116477 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | || || || || | ||| |||||||| | || | ||||||||||| || | Sbjct 1116478 CGAGAGTACGACCCTCTTCCAACTGTTTGCCTGCAAAAATCAGCCGCTGCTGGTCTGGGG 1116537 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 | || || || ||||| ||| ||| ||| | | || | ||| ||| | | ||| | Sbjct 1116538 GAATACCCTCCTTGTCTTGGATCTTCGCCTTTACGTTATCAATAGTGTCGCTAGCCTCTA 1116597 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | | | || || || ||||| || || ||||| ||||||||| Sbjct 1116598 CCTCAAGCGCTATTGTCTTCCCTGTTAGCGTCTTCACGAAGATCTGCATG 1116647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012304386560