Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq7 111 1e-19 seq14 105 5e-18 seq5 104 2e-17 >seq7 Length=1072466 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || | || |||| |||||| ||||| ||||| || || ||||| ||||| Sbjct 364043 CCCCCCGCGCAGACGGAGGACCAAATGCAGGGTGGATTCCTTCTGGATATTGTAATCGGC 364102 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | || | |||||||| || |||||||| |||| || ||||||||||| ||| Sbjct 364103 GAGCGTGCGTCCCTCCTCCAACTGCTTGCCCGCGAAAATCAGGCGCTGTTGGTCAGGAGG 364162 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||| || ||||| ||| | | |||||| | | | | || |||| || ||| Sbjct 364163 GATGCCTTCCTTGTCCTGAATCTTCGCCTTCACATTGTCAATCGTATCGCTGGCCTCGAC 364222 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || | | ||| || || || |||| ||| || || |||||||||||||| Sbjct 364223 CTCGAGCGCGATCGTCTTGCCCGTCAACGTCTTCACGAAAATCTGCATTTT 364273 >seq14 Length=332912 Score = 105 bits (116), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || | || |||| |||||| ||||| ||||| || |||||||| ||||| Sbjct 28305 CCCGCCACGCAGACGGAGGACCAAATGCAGGGTGGATTCCTTCTGGATGTTGTAATCGGC 28246 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | || | | |||||||| ||||||||||| |||| || || || |||||| || Sbjct 28245 GAGCGTGCGGCCCTCCTCCAACTGTTTGCCCGCGAAAATCAGGCGTTGCTGGTCCGGGGG 28186 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||||| ||||| || | | |||||| | | | | || |||| || ||| Sbjct 28185 GATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATCGTATCGCTGGCCTCGAC 28126 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || | | ||| || || || |||| ||| || || || ||||||||||| Sbjct 28125 CTCGAGCGCGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATTTT 28075 >seq5 Length=1237164 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 16704 TTTACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGT 16763 |||| || || ||||| | || |||| |||||| ||||| |||||||| |||||||||| Sbjct 1116415 TTTAGCCGCCACGTAGGCGAAGCACCAAATGCAGTGTGGATTCCTTTTGGATGTTGTAGT 1116474 Query 16764 CGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCA 16823 |||| | || | || ||||| |||||||| ||| |||| |||||||| ||||| Sbjct 1116475 CGGCGAGAGTACGACCCTCTTCCAACTGTTTGCCTGCAAAAATCAGCCGCTGCTGGTCTG 1116534 Query 16824 CAGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCT 16883 || | ||||| ||||| || | | ||| || | | | |||||||| | || Sbjct 1116535 GGGGAATACCCTCCTTGTCTTGGATCTTCGCCTTTACGTTATCAATAGTGTCGCTAGCCT 1116594 Query 16884 CCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || | | || || || || || ||||| || || || |||||||| Sbjct 1116595 CTACCTCAAGCGCTATTGTCTTCCCTGTTAGCGTCTTCACGAAGATCTGCAT 1116646 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| |||||| ||||| |||||||| |||||||||||||| | || | ||| Sbjct 1116663 AGCACCAAATGCAGTGTGGATTCCTTTTGGATGTTGTAGTCGGCGAGAGTACGACCCTCC 1116722 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 ||||| |||||||| ||| |||| |||||||| ||||| || | ||||| ||||| Sbjct 1116723 TCCAACTGTTTGCCTGCAAAAATCAGCCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCT 1116782 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | | ||| || | | | |||||||| | ||| || | | || || Sbjct 1116783 TGGATCTTCGCCTTTACGTTATCAATAGTGTCGCTAGCCTCTACCTCGAGCGCTATTGTC 1116842 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATTT 16937 || || || || || || || || |||||||||| Sbjct 1116843 TTCCCTGTTAGTGTCTTCACGAAGATCTGCATTT 1116876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405087585291160