Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq7 98.7 7e-16 seq43 95.1 8e-15 >seq7 Length=1072466 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || | || ||| | |||||||| || ||| ||||| || ||||||||||| | Sbjct 364044 CCCCCGCGCAGACGGAGGACCAAATGCAGGGTGGATTCCTTCTGGATATTGTAATCGGCG 364103 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| | || || || || || || || || || ||||| ||||| || | ||| Sbjct 364104 AGCGTGCGTCCCTCCTCCAACTGCTTGCCCGCGAAAATCAGGCGCTGTTGGTCAGGAGGG 364163 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| |||||| ||| || ||||||||| | | ||||| | || || Sbjct 364164 ATGCCTTCCTTGTCCTGAATCTTCGCCTTCACATTGTCAATCGTATCGCTGGCCTCGACC 364223 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTT 38322 || | | || || || |||||||| || |||||||| |||||||| |||| Sbjct 364224 TCGAGCGCGATCGTCTTGCCCGTCAACGTCTTCACGAAAATCTGCATTTTTT 364275 >seq43 Length=12995 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||| |||| |||||||||||||||| | ||| || |||||| | Sbjct 11093 AAGTCCGTTCCCTTGACTGTCGTTTCGCTAGATAGTAACTCGGGACAGAGGGAATCTCAT 11034 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||| |||||| || ||||| Sbjct 11033 TAATCCATTCATGCGCGTCTCTAATTGGAAGACGA 10999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946857097804