Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq8 118 1e-21 seq1 82.4 9e-11 >seq8 Length=1060349 Score = 118 bits (130), Expect = 1e-21 Identities = 596/931 (64%), Gaps = 24/931 (3%) Strand=Plus/Minus Query 92789 TCATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTT 92848 |||| |||||| ||| || || || ||||| | || || ||||| || |||||||||| Sbjct 1001187 TCATCACACCAGCTTTCTGATACTCGCCAACCCTCTTCTCGAAGAAGTTAGTCTTTCCTT 1001128 Query 92849 CCAAAGATATCGAATTCACTA-GT-GATTGGATTCTTGGCGTTATAATACTTTTCACCGA 92906 | || ||| | || | || || ||||| | ||||| |||| |||||| | | Sbjct 1001127 GAAGCGAGATCATCTCCATGAAGTCGAACGGATTTGTAGCGTTGTAATGCTTTTCTTC-A 1001069 Query 92907 TCAACTCGTACAATAAT----CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCA 92962 ||| || |||| | | || || ||||| || |||||||| |||||| || Sbjct 1001068 CCAAG-CG--CAATGAGAAGACGGTCCGCAACAAACTCGATGTACTGTCCCATCAACTCG 1001012 Query 92963 CAATTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACA 93022 | ||||| || | | ||||||||| | || ||| | || || | |||||| | Sbjct 1001011 GAGTTCATCCCAATCAAACGTACAGGCAACGCATCGCAAATAAACTCGTGCTCGATGTCC 1000952 Query 93023 ACGGCTTCTTTCAAGATTTCTATTACTCTACTATTTGGTGGTTT-TTGT--ACGACATAA 93079 || || | | | ||| || | || | ||| |||| || | | | | | Sbjct 1000951 ACCGCATTCGTGATGATCTCCAGCACACGCGACCGAGGTAGTTTGTTCTTGATGTGGTGA 1000892 Query 93080 TTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTG 93139 ||||| || ||||||||||| || || || || || || || || |||| || ||| Sbjct 1000891 GAGTACAACAAACACGCAAAGTCCGTGTGCAACCCCTCATCGCGCGAGATCAGTTCGTTG 1000832 Query 93140 CTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA 93199 ||||| |||| || || | || || || || |||||||| || | || | ||||| | Sbjct 1000831 CTGAAGGTTAGCCCAGGCATCACGCCGCGCTTTTTGAGCCAGAACAGTGCA-CAAAATGA 1000773 Query 93200 -CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGC 93258 || ||||| || ||||| ||||| |||||||| || | | || || ||| | Sbjct 1000772 CCCTGAAAAGAAGATACCCTCCACAGCTGCAAACGCGATCAGGCGCTCCTGGAAACT--- 1000716 Query 93259 GGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGT 93318 | | || | |||||| || |||||| ||||| || || | ||||| || | || Sbjct 1000715 GCTCTCGCTCCCAATCCATCGTACAGCCCACTCGGCCTTATTTTGGATACACGGAATCGT 1000656 Query 93319 TTCGATAGCGTTAA--ATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATT 93376 | || |||| | | | |||| || ||| ||| ||| ||||| || || | Sbjct 1000655 CTGAATCGCGTGCAGCAAACGTAA-CT-TCTCATCCTGATCCATAATGTACGTGTCCAGC 1000598 Query 93377 AACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACAT 93436 | || || ||| | || || || | ||||||||| | || || |||||||| Sbjct 1000597 AGCACCGAGTACGTCTCTGAGTGAATATTCTCCATCATCAGCTGAAACCCGTAGAACGCA 1000538 Query 93437 CTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATA 93496 | || || | || | ||| || || | || |||| || || |||| || Sbjct 1000537 CGCGCCTCTGGTATTTTCACGTCCGTCATGAAGCGCTGCGCGAGGTTCTCGATGACGATG 1000478 Query 93497 CCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTA 93556 || ||| | | || || || || | | ||||| || |||||| ||| |||| || Sbjct 1000477 CCGTCGCTTCCCGCGAAGAACGCAAGCACGTGCTTGATGAAATGTCGCTCCCCATCGTTC 1000418 Query 93557 AGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAA-ACGA 93615 ||||| |||| || | ||| | || |||| ||||| || ||||||| || Sbjct 1000417 AGCTTCACCCAGTCCACCATATCGCTGCCCAGGTCGATCTCTTCCACCGTCCAAATACAG 1000358 Query 93616 TGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAA 93675 || |||| | |||||| | ||| ||||| || || ||||| || || |||||| | Sbjct 1000357 CTCTCCTGC-TCCTTGTACTTTCGCCAGATGTCATGGTACTGAATCGGGAACATGACATA 1000299 Query 93676 ACGATTAGGGTTATCTTTTAGTAACGGCTCT 93706 || | || || || || | | |||||| Sbjct 1000298 CCGGTACGGATTTTCCTTCTGAAGGGGCTCT 1000268 >seq1 Length=2329561 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/67 (90%), Gaps = 2/67 (3%) Strand=Plus/Minus Query 126273 TGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGGTTCGA 126332 ||||||||||||||||||||||||||||| | ||||| || ||| | |||||||||||| Sbjct 1923477 TGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGG-TCTTTCGAG-GCGTGGGTTCGA 1923420 Query 126333 ACCCCAC 126339 ||||||| Sbjct 1923419 ACCCCAC 1923413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860215296160