Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq14 127 2e-24 seq5 105 6e-18 >seq14 Length=332912 Score = 127 bits (140), Expect = 2e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 22211 TTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGG 22270 || |||| ||||| || || || || || || || || || ||| || | || || || | Sbjct 28070 TTATAAAAATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCGCGCTCGAGGTCG 28129 Query 22271 AAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCAC 22330 | ||| |||||| | ||| | | || || || || ||||||||||| || || | Sbjct 28130 AGGCCAGCGATACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCCC 28189 Query 22331 CCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCG 22390 | || || ||||| || || || || ||||||||||| ||||| |||||| || ||| Sbjct 28190 CGGACCAGCAACGCCTGATTTTCGCGGGCAAACAGTTGGAGGAGGGCCGCACGCTCGCCG 28249 Query 22391 ATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||||| || || ||||||||| | ||||| || | || |||| || || Sbjct 28250 ATTACAACATCCAGAAGGAATCCACCCTGCATTTGGTCCTCCGTCTGCGTGGCGG 28304 >seq5 Length=1237164 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || |||||||||||||||||||| || || || || || || || ||||| |||||| Sbjct 1116790 AAGATCCAAGACAAGGAGGGTATTCCCCCAGACCAGCAGCGGCTGATTTTTGCAGGCAAA 1116731 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||||| ||||| || || || |||| |||||||| ||||| |||||||| | ||| Sbjct 1116730 CAGTTGGAGGAGGGTCGTACTCTCGCCGACTACAACATCCAAAAGGAATCCACACTGCAT 1116671 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 || || | || |||| || || Sbjct 1116670 TTGGTGCTCCGTCTGCGTGGTGG 1116648 Score = 100 bits (110), Expect = 2e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || |||||||||||||||||||| || || || || || || || ||||| |||||| Sbjct 1116562 AAGATCCAAGACAAGGAGGGTATTCCCCCAGACCAGCAGCGGCTGATTTTTGCAGGCAAA 1116503 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||||| || || || || || |||| |||||||| ||||| |||||||| | ||| Sbjct 1116502 CAGTTGGAAGAGGGTCGTACTCTCGCCGACTACAACATCCAAAAGGAATCCACACTGCAT 1116443 Query 22423 TTAGT 22427 || || Sbjct 1116442 TTGGT 1116438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727570303460