Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq8 141 2e-28 >seq8 Length=1060349 Score = 141 bits (156), Expect = 2e-28 Identities = 275/403 (68%), Gaps = 5/403 (1%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| |||| ||| || | || ||||| | ||||||||||||||| || ||||| Sbjct 1001149 TCGAAGAAGTTAGTCTTTCCTTGAAGCGAGATCATCTCCATGAAGTCGAACGGATTTGTA 1001090 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||||| | ||||| || | || | ||||| || |||||||| | Sbjct 1001089 GCGTTGTAATGCTTTTCTTCACCAAGCGCAATGAGAAGACGGTCCGCAACAAACTCGATG 1001030 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||||||||||| || |||||||| ||||||| ||| ||| | || || || || Sbjct 1001029 TACTGTCCCATCAACTCGGAGTTCATCCCAATCAAACGTACAGGCAACGCATCGCAAATA 1000970 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || | ||| || | || || | | | || || ||| | | | ||| || Sbjct 1000969 AACTCGTGCTCGATGTCCACCGCATTCGTGATGATCTCCAGCACACGCGACCGAGGTAGT 1000910 Query 251803 TTGTTCTCCA---GCTTTGAGTAC-AGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 ||||||| | | | |||||| | | | || |||| | ||||| ||||| || Sbjct 1000909 TTGTTCTTGATGTGGTGAGAGTACAACAAACACG-CAAAGTCCGTGTGCAACCCCTCATC 1000851 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 ||| ||| | |||||| | || ||||||||||| || || || ||||||| Sbjct 1000850 GCGCGAGATCAGTTCGTTGCTGAAGGTTAGCCCAGGCATCACGCCGCGCTTTTTGAGCCA 1000791 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACA 251961 ||| | ||| ||||| || || || || | | |||||| ||| Sbjct 1000790 GAACAGTGCACAAAATGACCCTGAAAAGAAGATACCCTCCACA 1000748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027835693790644