Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq7 136 7e-27 seq5 134 3e-26 seq8 102 2e-16 seq6 87.8 3e-12 seq4 87.8 3e-12 seq1 87.8 3e-12 >seq7 Length=1072466 Score = 136 bits (150), Expect = 7e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | ||||| || || ||||| || || ||||| || ||||||| | Sbjct 364044 CCCCCGCGCAGACGGAGGACCAAATGCAGGGTGGATTCCTTCTGGATATTGTAATCGGCG 364103 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || |||||||| || ||||| || || | |||||||| || || Sbjct 364104 AGCGTGCGTCCCTCCTCCAACTGCTTGCCCGCGAAAATCAGGCGCTGTTGGTCAGGAGGG 364163 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 |||||||||||||| |||||||| ||||| || || || || || ||| | || || Sbjct 364164 ATGCCTTCCTTGTCCTGAATCTTCGCCTTCACATTGTCAATCGTATC-GCTGGCCTCGAC 364222 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | | ||| || || ||||| | ||||| ||||| ||||||||| Sbjct 364223 CTCGAGCGCGATCGTCTTGCCCGTCAACGTCTTCACGAAAATCTGCATT 364271 >seq5 Length=1237164 Score = 134 bits (148), Expect = 3e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | ||||| || || ||||| || ||||||||||| || |||| | Sbjct 1116420 CCGCCACGTAGGCGAAGCACCAAATGCAGTGTGGATTCCTTTTGGATGTTGTAGTCGGCG 1116479 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| ||||| || || || || || || | || ||||| || ||| Sbjct 1116480 AGAGTACGACCCTCTTCCAACTGTTTGCCTGCAAAAATCAGCCGCTGCTGGTCTGGGGGA 1116539 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || || ||||||||||| ||||| ||||| ||| || || ||||| ||| | ||||| Sbjct 1116540 ATACCCTCCTTGTCTTGGATCTTCGCCTTTACGTTATCAATAGTGTC-GCTAGCCTCTAC 1116598 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | | || || || || || || ||||| ||||| |||||||| Sbjct 1116599 CTCAAGCGCTATTGTCTTCCCTGTTAGCGTCTTCACGAAGATCTGCAT 1116646 Score = 127 bits (140), Expect = 4e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | ||||| || || ||||| || ||||||||||| || |||| | Sbjct 1116648 CCACCACGCAGACGGAGCACCAAATGCAGTGTGGATTCCTTTTGGATGTTGTAGTCGGCG 1116707 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || ||||| || || || || || || | || ||||| || ||| Sbjct 1116708 AGAGTACGACCCTCCTCCAACTGTTTGCCTGCAAAAATCAGCCGCTGCTGGTCTGGGGGA 1116767 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || || ||||||||||| ||||| ||||| ||| || || ||||| ||| | ||||| Sbjct 1116768 ATACCCTCCTTGTCTTGGATCTTCGCCTTTACGTTATCAATAGTGTC-GCTAGCCTCTAC 1116826 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | | || || || || || || ||||| ||||| ||||||||| Sbjct 1116827 CTCGAGCGCTATTGTCTTCCCTGTTAGTGTCTTCACGAAGATCTGCATT 1116875 >seq8 Length=1060349 Score = 102 bits (112), Expect = 2e-16 Identities = 167/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 9934 TCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCT 9993 |||| || || || ||||| ||||| |||| |||||||||||| | ||| || | Sbjct 1001187 TCATCACACCAGCTTTCTGATACTCGCCAACCCTCTTCTCGAAGAAGTTAGTCTTTCCTT 1001128 Query 9994 CGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAAC 10053 || || || | |||||||||||| || || || ||| | ||||| | || Sbjct 1001127 GAAGCGAGATCATCTCCATGAAGTCGAACGGATTTGTAGCGTTGTAATGCTTTTCTTCAC 1001068 Query 10054 CGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGT 10113 | || || ||| || ||||| || || |||||||||||||| | ||||| || |||| Sbjct 1001067 CAAGCGCAATGAGAAGACGGTCCGCAACAAACTCGATGTACTGTCCCATCAACTCGGAGT 1001008 Query 10114 TCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCG 10173 |||| ||||||| || || | || |||||||| || || | ||| || | |||| Sbjct 1001007 TCATCCCAATCAAACGTACAGGCAACGCATCGCAAATAAACTCGTGCTCGATGTCCACCG 1000948 Query 10174 C 10174 | Sbjct 1000947 C 1000947 Score = 87.8 bits (96), Expect = 3e-12 Identities = 136/192 (71%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 10623 AGGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAG 10682 |||||||| || || ||||| ||||| || || ||||| | || | |||||||||||| Sbjct 1000495 AGGTTCTCGATGACGATGCCGTCGCTTCCCGCGAAGAACGCAAGCACGTGCTTGATGAAA 1000436 Query 10683 TGGCGCTCATCATCGTTCAGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACC 10742 || ||||| |||||||||| ||||| |||||| |||| ||| | || | || | Sbjct 1000435 TGTCGCTCCCCATCGTTCAG--CTTCAC-CCAGTCCACCATATCGCTGCCCAGGTCGATC 1000379 Query 10743 TCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGGTAC 10802 || ||||| ||||| | | | | || ||||||| | | | ||||| ||||| Sbjct 1000378 TCTTCCACCGTCCAAATACAGCTCTCCTGCTCCTTGTACTTTCGCCAGATGTCATGGTAC 1000319 Query 10803 CGGATGGGGAAC 10814 | || |||||| Sbjct 1000318 TGAATCGGGAAC 1000307 >seq6 Length=1214749 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 1141594 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 1141537 >seq4 Length=1647180 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 176738 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 176681 >seq1 Length=2329561 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 829478 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 829421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621432296480