Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq8 179 7e-40 >seq8 Length=1060349 Score = 179 bits (198), Expect = 7e-40 Identities = 575/871 (66%), Gaps = 31/871 (4%) Strand=Plus/Plus Query 42289 AGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGG 42348 || |||| ||||||||| | ||||||| || | || || | ||||| | || | Sbjct 1000318 AGTACCATGACATCTGGCGAAAGTACAAGGAGCAGGAGAGCTGTATTTGGACGGTGGAAG 1000377 Query 42349 AGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA----GAACGAAAAG 42404 |||| ||||||| || || | || | ||||| | ||| || || ||| | Sbjct 1000378 AGATCGACCTGGGCAGCGATATGGTGGACTGGGTGAAGCTGAACGATGGGGAGCGACA-- 1000435 Query 42405 TTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAAC 42464 |||| |||| || | || || |||||||| | |||||||| |||| |||||| Sbjct 1000436 --TTTCATCAAGCACGTGCTTGCGTTCTTCGCGGGAAGCGACGGCATCGTCATCGAGAAC 1000493 Query 42465 CTGGC-CACCAGGTTCATGAAAGAGGTGCAG-TACTTTGAGGCGCGCTGC-TTCTACGGC 42521 || || || | | ||||||| || ||| | ||| |||||||| ||| |||||||| Sbjct 1000494 CTCGCGCAGC-GCTTCATGACGGACGTGAAAATACCA-GAGGCGCG-TGCGTTCTACGGG 1000550 Query 42522 TTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTAC 42581 || ||| | || ||||| | ||||| ||| |||| | ||||| |||||||| Sbjct 1000551 TTTCAGCTGATGATGGAGAATATTCACTCAGAGACGTACTCGGTGCTGCTGGACACGTAC 1000610 Query 42582 ATCCTGGATCCCGTCGAGC-GTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCAT 42640 || |||||| | ||| || ||| || | | || || ||||||| || || || Sbjct 1000611 ATTATGGATCAGGATGAGAAGTTACGTT-TGCTGCACGCGATTCAGACGATTCCGTGTAT 1000669 Query 42641 CAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGA 42700 | | || ||||| || ||||| | ||||| | ||| ||| | ||| || Sbjct 1000670 CCAAAATAAGGCCGAGTGGGCTGTACGATGGATTGGGAG---CGAGAGCAGTTTCCAGGA 1000726 Query 42701 GAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCAT 42760 | | ||| | || ||| | || || ||||| |||||||| || || | || | | Sbjct 1000727 GCGCCTGATCGCGTTTGCAGCTGTGGAGGGTATCTTCTTTTCAGGGTCATTTTGTGCACT 1000786 Query 42761 CTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCA 42819 ||||||||||| || || || |||||| || || |||||| |||||||| ||| Sbjct 1000787 GTTCTGGCTCAAAAAGCGCGGCGT-GATGCCTGGGCTAACCTTCAGCAACGAACTGATCT 1000845 Query 42820 GCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGC 42879 | || |||||| |||| | ||||||||| || | ||| ||| |||| ||| | Sbjct 1000846 CGCGCGATGAGGGGTTGCACACGGACTTTGCGTGTTTGTTGTACTCTCACCACATCAAGA 1000905 Query 42880 ACAAGC--CCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAA 42937 |||| | ||||| | ||| || | || ||||||||| | || ||||| |||||| | Sbjct 1000906 ACAAACTACCTCG--GTCGCGTGTGCTGGAGATCATCACGAATGCGGTGGACATCGAGCA 1000963 Query 42938 GGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTG 42997 ||||| | | || |||| || || | || |||||| ||| | ||| | Sbjct 1000964 CGAGTTTATTTGCGATGCGTTGCCTGTACGTTTGATTGGGATGAACTCCGAGTTGATGGG 1001023 Query 42998 CAAGTACATCCAGTACGTCGCCGACCATCTCCT--GTGCCAGATGGGT-CTCAGCCGCCT 43054 |||||||| ||| || || |||| ||| || ||| | | ||| | || | Sbjct 1001024 ACAGTACATCGAGTTTGTTGCGGACCGTCTTCTCATTGC--GCTTGGTGAAGAAAAGCAT 1001081 Query 43055 CTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAA 43114 |||||| | | || |||||||| ||||||| |||||| | | || ||||| || Sbjct 1001082 -TACAACGCTACAAATCCGTTCGACTTCATGGAGATGATCTCGCTTCAAGGAAAGACTAA 1001140 Query 43115 CTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||| ||||||||| | || | ||| || ||| Sbjct 1001141 CTTCTTCGAGAAGAGGGTTGGCGAGTATCAG 1001171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338208443840