Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq7 163 7e-35 seq5 149 1e-30 seq14 145 2e-29 seq8 91.5 3e-13 >seq7 Length=1072466 Score = 163 bits (180), Expect = 7e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | || || | ||| | ||| ||| || |||||||| || |||||| Sbjct 364044 CCCCCGCGCAGACGGAGGACCAAATGCAGGGTGGATTCCTTCTGGATATTGTAATCGGCG 364103 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||||||||| || || || || || || ||||| ||||| |||||||| | ||| Sbjct 364104 AGCGTGCGTCCCTCCTCCAACTGCTTGCCCGCGAAAATCAGGCGCTGTTGGTCAGGAGGG 364163 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || ||||| || ||||| ||||| || || || | |||||| | || || Sbjct 364164 ATGCCTTCCTTGTCCTGAATCTTCGCCTTCACATTGTCAATCGTATCGCTGGCCTCGACC 364223 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||||| ||||||||| || |||| ||||| ||||| ||||||||| Sbjct 364224 TCGAGCGCGATCGTCTTGCCCGTCAACGTCTTCACGAAAATCTGCATT 364271 >seq5 Length=1237164 Score = 149 bits (164), Expect = 1e-30 Identities = 181/244 (74%), Gaps = 7/244 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || || | ||| | ||| ||| |||||||| || |||| Sbjct 1116644 CATG-CCACCACGCAGACGGAGCACCAAATGCAGTGTGGATTCCTTTTGGATGTTGTAGT 1116702 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||||||| || || || || || || ||||| ||||| || ||||| ||||| || | Sbjct 1116703 CGGCGAGAGTACGACCCTCCTCCAACTGTTTGCCTGCAAAAATCAGCCGCTGCTG---GT 1116759 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 ||||| || || || || || ||||| ||||| || ||||| || |||| ||||| | Sbjct 1116760 CTGGGGGAATACCCTCCTTGTCTTGGATCTTCGCCTTTACGTTATCAATAGTGTCGCTAG 1116819 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGT 288478 ||||| ||||||| || |||||||| || || ||||| ||||| ||||||||| | Sbjct 1116820 CCTCTACCTCGAGCGCTATTGTCTTCCCTGTTAGTGTCTTCACGAAGATCTGCATTTCCT 1116879 Query 288479 TATT 288482 |||| Sbjct 1116880 TATT 1116883 Score = 145 bits (160), Expect = 2e-29 Identities = 171/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || || | ||| || | ||| | ||| ||| |||||||| || ||||||||| Sbjct 1116420 CCGCCACGTAGGCGAAGCACCAAATGCAGTGTGGATTCCTTTTGGATGTTGTAGTCGGCG 1116479 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| || ||||| ||||| || ||||| ||||| || |||||| Sbjct 1116480 AGAGTACGACCCTCTTCCAACTGTTTGCCTGCAAAAATCAGCCGCTGCTG---GTCTGGG 1116536 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || || ||||| ||||| || ||||| || |||| ||||| | ||| Sbjct 1116537 GGAATACCCTCCTTGTCTTGGATCTTCGCCTTTACGTTATCAATAGTGTCGCTAGCCTCT 1116596 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || |||| || |||||||| || || ||||| ||||| |||||||| Sbjct 1116597 ACCTCAAGCGCTATTGTCTTCCCTGTTAGCGTCTTCACGAAGATCTGCAT 1116646 >seq14 Length=332912 Score = 145 bits (160), Expect = 2e-29 Identities = 148/193 (77%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || || |||||||||||||| || || || || ||||| || ||||| Sbjct 28269 TTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCCTCCTCCAACTGTTTGCCCGCGAA 28210 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| || || || ||||| || || || |||||||| ||||| |||||||| Sbjct 28209 AATCAGGCGTTGCTGGTCCGGGGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 28150 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | |||||| | || || ||||||| ||||||||| || |||| ||||| || Sbjct 28149 GTCGATCGTATCGCTGGCCTCGACCTCGAGCGCGATCGTCTTGCCCGTCAACGTCTTCAC 28090 Query 288462 GAATATCTGCATT 288474 ||| ||||||||| Sbjct 28089 GAAGATCTGCATT 28077 >seq8 Length=1060349 Score = 91.5 bits (100), Expect = 3e-13 Identities = 156/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 269119 GAGTTCATTTGTGACGCTATCCCATGTTC-TATGATCGGTATGAATGCCGATCTCATGAA 269177 ||||| ||||| || || | || ||| | | |||| || ||||| |||| | ||| Sbjct 1000965 GAGTTTATTTGCGATGCGTTGCC-TGTACGTTTGATTGGGATGAACTCCGAGTTGATGGG 1001023 Query 269178 TCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGTA 269237 || || ||||| || || || || ||| | ||| || || ||| | || || || Sbjct 1001024 ACAGTACATCGAGTTTGTTGCGGACCGTCTTCTCATTGCGCTTGGTGAAGAAAAGCATTA 1001083 Query 269238 CAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTT 269297 ||| | | ||||| |||| ||| ||||| | || ||||| |||||||||| ||||| Sbjct 1001084 CAACGCTACAAATCCGTTCGACTTCATGGAGATGATCTCGCTTCAAGGAAAGACTAACTT 1001143 Query 269298 CTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGTAATGA 269341 |||||| ||| | || |||| ||||| ||||||| |||| Sbjct 1001144 CTTCGAGAAGAGGGTTGGCGAGTATCAGAAAGCTGGTGTGATGA 1001187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653130396952