Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1 113 5e-20 seq8 95.1 1e-14 >seq1 Length=2329561 Score = 113 bits (124), Expect = 5e-20 Identities = 671/1060 (63%), Gaps = 39/1060 (4%) Strand=Plus/Minus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 |||||||| ||||| ||||||||||| |||| | |||| || | |||||| || | Sbjct 97174 CGGAGGTAATACATGCCCGTCTTGAGGCCCTTTTCCCAGCAGTAGAAATGCATAGACGTA 97115 Query 113657 A-ACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAA 113715 | || ||| | ||||||||||| || || |||| || |||||||| ||| | Sbjct 97114 ATACGCCCGGAG-GAAGGACTTTCCATAAAAAGATTCAACGACTGCGATTGATCAATGTA 97056 Query 113716 GCGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCT 113775 ||||||||||| ||||| | ||||||||| | ||| ||||| || ||| | Sbjct 97055 CTTCCCACGATCCGCGGCCATCTGGATCACATCCCGCTGTGAGATCTCCCAGACGGTTTT 96996 Query 113776 GTAGAGGTTCTTAATATCATCTGGGATATC---CACGATATTTTGGATGGAGCCACCCGC 113832 |||||| || || | || || ||| | |||| |||||||||||| Sbjct 96995 GTAGAGTTTTTTGAGGTCCTCGCCGATCCCTTGCACGCG---TTGGATGGAGCCGTTAAA 96939 Query 113833 CTTGACCATGAGATCCTTCA------TATCCTTTGACCAGAGACCAATCTTTTTGAGATC 113886 ||| ||| || || |||| || ||| | ||| || | ||| Sbjct 96938 GGTGA---TGATCTCGTTGCGAACGGTATCATT---CCACATCCCACGCTCAACCAAATC 96885 Query 113887 CTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGAT 113946 | ||| |||| ||||| || || |||||| || | || | || || || Sbjct 96884 CCGCACCAGATATTTATTTACCACGGGAAACTCCCCACTTAACACCCGACGAAGGTAAAT 96825 Query 113947 ATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGT 114006 ||| | || ||||||||| || ||||| || ||||| ||||| | ||| ||||| || Sbjct 96824 ATTCGAGGTAAATGGCTCAATACATTCATTATTGCCCAAAATTTGCGAGGTCGAGGCGGT 96765 Query 114007 GGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAG 114066 ||||| || |||| | | | || || | || || ||| ||| |||| | Sbjct 96764 TGGCATAGGGGCCAACAACAAGGAATTGCGCATGCCGGAGACCTTAAGCCGTGCCTTTAA 96705 Query 114067 GGCGTCCCAGTCGTAGTTGA--GCT--TTG--TCTCCCCCTGCCACATATCAAACTGGAG 114120 || ||||| || | | | ||| ||| | | ||| ||| | ||||||||| | Sbjct 96704 CGCATCCCAATCCCA-TCGCCCGCTCGTTGGTTTTTTCCC--CCAAAGATCAAACTGCAA 96648 Query 114121 GATACCTTGGGAGGCTGGCGATCCCTC-AAATGTCTCGTATGGGCCCTCAACCTCCGCCA 114179 ||| || |||| || || | || |||| | || || || | |||||| | Sbjct 96647 GATCCCCTGGGCCGCCGGGCTTTGGTCGAAATCGGTA-TAACTCCCTTCCATCTCCGCGA 96589 Query 114180 ATTCG---GAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCA 114236 || ||| ||||||| | |||| ||| || || || || || |||||| Sbjct 96588 GATCCACCGAG---GCCTCGACCGAGGCGTAATAGATGGTTTCGAAGATTTCCTCATTCA 96532 Query 114237 TTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGAC 114296 | | | |||| | ||| | | || || |||||| ||| || || | Sbjct 96531 ACCGCATCGACTCGGGCTCAGTAAAGGTCTGGCGAAGCAGAATAAAAGTATCGGCAAGCC 96472 Query 114297 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGG 114356 | ||||| || | || || ||||||| ||||||| | || || |||||||| | Sbjct 96471 CCTGGACGCCTATCCCGATCGGGCGATAATTCATATTGCTCCGCCGCGCCGTCTCCACTG 96412 Query 114357 GATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCAT 114416 | || | |||| ||||| | ||| || || | |||||| |||| |||| || | Sbjct 96411 GGTAGTAGGAATTATCAATAACGCGATTAAGGTTGTAGGTGACCTCCTTCGTGACCTCGT 96352 Query 114417 GAAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATT 114475 ||| || | | || ||| | |||| | | ||| || || ||||||| Sbjct 96351 AGAGCAGTTGATGGTTGAAGACTT-GCTTCTCGACGTCCACAAACCGCGGCAGGGCGAGG 96293 Query 114476 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACAC 114535 || |||| ||| ||||| | |||| ||| ||||| || | |||||| |||||| Sbjct 96292 GAGGCCAAATTGCACACCGCTGTCTGCTCCGGGGATGTGTATTCCACAATTTCGGTACAC 96233 Query 114536 AAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCC 114595 ||||| || | ||||| || || | || ||||| || |||||| || ||||| || Sbjct 96232 AAATTCGAGCATTTAATCGTCCCGATGTGTTTTTGGTTCGACTTTCGATTGCACGCGTCT 96173 Query 114596 TTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACT 114635 ||||| ||||| | ||| ||||||||| |||||| || Sbjct 96172 TTGTAGAGCATAAAAGGCACCCCCGTCTCGATTTGGGTCT 96133 >seq8 Length=1060349 Score = 95.1 bits (104), Expect = 1e-14 Identities = 305/465 (66%), Gaps = 24/465 (5%) Strand=Plus/Minus Query 125748 CCAGCTTGCCG-TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCT- 125805 ||||||| | | || || ||||||| ||||||||||||||| ||||| || | |||| Sbjct 1001179 CCAGCTTTCTGATACTCGCCAACCCTCTTCTCGAAGAAGTTAGTCTTTCCTTG-AAGCGA 1001121 Query 125806 GATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTG 125865 ||| ||||||| || || || || || | | ||| || || | |||| | Sbjct 1001120 GATCATCTCCATGAAGTCGAACGGATTTGTAGCGTTGTAATGCTTTTCTTCACCAAGCGC 1001061 Query 125866 TTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACC 125925 |||| ||||| |||| || |||| ||||||| |||| ||| |||||||| || Sbjct 1001060 AATGAGAAGACGGTCCGCAACAAACTCGATGTACTGTCCCATCAACTCGGAGTTCATCCC 1001001 Query 125926 GATGAGGT-TACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCC 125984 || | |||| || | ||| || | || ||| | | ||| || ||||| || | | Sbjct 1001000 AATCAAACGTACA-GGCAACGCATCGCAAATAAACTCGTGCTCGATGTCCACCGCATTCG 1000942 Query 125985 GCACGATGGCGTGAATGGTGTCCAC----CCCAGGTCTATTGCGCA--AAGTCTTGAAGA 126038 | ||| | | | ||| || |||| ||| | | || ||| || Sbjct 1000941 TGATGATCTCCAGCA-------CACGCGACCGAGGTAGTTTGTTCTTGATGTGGTGA-GA 1000890 Query 126039 GTTCCACG-----GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGA 126093 || | || ||||| || ||| | ||||| || || ||||| ||||| || Sbjct 1000889 GTACAACAAACACGCAAAGTCCGTGTGCAACCCCTCATCGCGCGAGATCAGTTCGTTGCT 1000830 Query 126094 GAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACC 126153 |||| || || ||||| | || ||||| || | |||||| | ||||||||||| || Sbjct 1000829 GAAGGTTAGCCCAGGCATCACGCCGCGCTTTTTGAGCCAGAACAGTGCACAAAATGACCC 1000770 Query 126154 CGAGAAGAAGATTCCCTCCACACACGCGAACGCAAAGAGACGCTC 126198 || |||||||| ||||||||| || ||||| | || ||||| Sbjct 1000769 TGAAAAGAAGATACCCTCCACAGCTGCAAACGCGATCAGGCGCTC 1000725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597352972778720