Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq5 107 2e-18 seq14 104 2e-17 >seq5 Length=1237164 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| || | | |||||| | ||| | || ||||| ||||| |||||||| || ||| Sbjct 1116420 CCGCCACGTAGGCGAAGCACCAAATGCAGTGTGGATTCCTTTTGGATGTTGTAGTCGGCG 1116479 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | ||||| | ||| ||||| ||| |||| |||||||||||||| || ||| Sbjct 1116480 AGAGTACGACCCTCTTCCAACTGTTTGCCTGCAAAAATCAGCCGCTGCTGGTCTGGGGGA 1116539 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || ||||| || || |||||| || | || || | || || || Sbjct 1116540 ATACCCTCCTTGTCTTGGATCTTCGCCTTTACGTTATCAATAGTGTCGCTAGCCTCTACC 1116599 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | | || ||||| || || | || || ||||| || ||||| Sbjct 1116600 TCAAGCGCTATTGTCTTCCCTGTTAGCGTCTTCACGAAGATCTGCAT 1116646 Score = 102 bits (112), Expect = 8e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | ||| | || ||||| ||||| |||||||| || |||| || || | || Sbjct 1116663 AGCACCAAATGCAGTGTGGATTCCTTTTGGATGTTGTAGTCGGCGAGAGTACGACCCTCC 1116722 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||| ||||| ||| |||| |||||||||||||| || ||||| || || || ||| Sbjct 1116723 TCCAACTGTTTGCCTGCAAAAATCAGCCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCT 1116782 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || |||||| || | || || | || || || || | | || ||| Sbjct 1116783 TGGATCTTCGCCTTTACGTTATCAATAGTGTCGCTAGCCTCTACCTCGAGCGCTATTGTC 1116842 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTT 64445 || || || | || || ||||| || ||||||| Sbjct 1116843 TTCCCTGTTAGTGTCTTCACGAAGATCTGCATTT 1116876 >seq14 Length=332912 Score = 104 bits (114), Expect = 2e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| |||| | || || | ||| | || ||||| || || ||||||||||| ||| Sbjct 28304 CCGCCACGCAGACGGAGGACCAAATGCAGGGTGGATTCCTTCTGGATGTTGTAATCGGCG 28245 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || | ||| ||||| || |||| || || |||||||| || || Sbjct 28244 AGCGTGCGGCCCTCCTCCAACTGTTTGCCCGCGAAAATCAGGCGTTGCTGGTCCGGGGGG 28185 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || || | ||||| | ||| || || Sbjct 28184 ATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATCGTATCGCTGGCCTCGACC 28125 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAATAA 64451 || | | | |||||||| ||||| || || ||||| || |||||||| |||| Sbjct 28124 TCGAGCGCGATCGTCTTGCCCGTCAACGTCTTCACGAAGATCTGCATTTTTATAA 28070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644275372960