Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq8 132 5e-26 seq5 91.5 1e-13 >seq8 Length=1060349 Score = 132 bits (146), Expect = 5e-26 Identities = 251/367 (68%), Gaps = 2/367 (1%) Strand=Plus/Plus Query 52476 GGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCAC 52535 ||| | ||||| || || || ||||||||||| |||| |||||||| || || ||||| Sbjct 1000806 GGCGTGATGCCTGGGCTAACCTTCAGCAACGAACTGATCTCGCGCGATGAGGGGTTGCAC 1000865 Query 52536 ACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGACACG 52595 |||||||||||||| | | ||| | | | | | ||| | | ||| | || Sbjct 1000866 ACGGACTTTGCGTGTTTGTTGTACTCTCACCACATCAAGAACAAACTACCT-CGGTCGCG 1000924 Query 52596 A-TCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCT 52654 | ||| || ||| | | ||||||| ||||| | |||||| || | ||| | Sbjct 1000925 TGTGCTGGAGATCATCACGAATGCGGTGGACATCGAGCACGAGTTTATTTGCGATGCGTT 1000984 Query 52655 GCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGC 52714 ||| || || | || |||||| | ||| ||| | |||||||||||||||| || Sbjct 1000985 GCCTGTACGTTTGATTGGGATGAACTCCGAGTTGATGGGACAGTACATCGAGTTTGTTGC 1001044 Query 52715 GGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGA 52774 ||| ||||| | | ||| || | |||| | | ||||||| |||||||| || Sbjct 1001045 GGACCGTCTTCTCATTGCGCTTGGTGAAGAAAAGCATTACAACGCTACAAATCCGTTCGA 1001104 Query 52775 GTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGA 52834 || ||| | | || |||||| | || ||||| ||||| ||||||||| | || ||||| Sbjct 1001105 CTTCATGGAGATGATCTCGCTTCAAGGAAAGACTAACTTCTTCGAGAAGAGGGTTGGCGA 1001164 Query 52835 GTATAAG 52841 |||| || Sbjct 1001165 GTATCAG 1001171 >seq5 Length=1237164 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||| | || ||||| | | || |||||||| |||||||||||| Sbjct 1116647 GCCACCACGCAGACGGAGCACCAAATGCAGTGTGGATTCCTTTTGGATGTTGTAGTCGGC 1116706 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | |||||| ||||| | ||||| || | | | || || ||||| ||||| || || Sbjct 1116707 GAGAGTACGACCCTCCTCCAACTGTTTGCCTGCAAAAATCAGCCGCTGCTGGTCTGGGGG 1116766 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| || |||| | || | |||||| | | ||| || Sbjct 1116767 AATACCCTCCTTGTCTTGGATCTTCGCCTTTACGTTATCAATAGTGTCGCTAGCCTCTAC 1116826 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | || || || || || || || || || |||||||| Sbjct 1116827 CTCGAGCGCTATTGTCTTCCCTGTTAGTGTCTTCACGAAGATCTGCAT 1116874 Score = 82.4 bits (90), Expect = 8e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 138386 AGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGC 138445 ||||||| || | || | || ||||| | | || |||||||| |||||||||||| Sbjct 1116418 AGCCGCCACGTAGGCGAAGCACCAAATGCAGTGTGGATTCCTTTTGGATGTTGTAGTCGG 1116477 Query 138446 TCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | |||||| || || | ||||| || | | | || || ||||| ||||| || | Sbjct 1116478 CGAGAGTACGACCCTCTTCCAACTGTTTGCCTGCAAAAATCAGCCGCTGCTGGTCTGGGG 1116537 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 | ||||| || ||||| ||| || |||| | || | |||||| | | ||| | Sbjct 1116538 GAATACCCTCCTTGTCTTGGATCTTCGCCTTTACGTTATCAATAGTGTCGCTAGCCTCTA 1116597 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| | || | || || || || || || || || || ||||||||| Sbjct 1116598 CCTCAAGCGCTATTGTCTTCCCTGTTAGCGTCTTCACGAAGATCTGCATG 1116647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261878924480