Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1 118 1e-21 seq5 86.0 6e-12 >seq1 Length=2329561 Score = 118 bits (130), Expect = 1e-21 Identities = 501/785 (64%), Gaps = 15/785 (2%) Strand=Plus/Plus Query 122979 ACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCACTTTGTTCGCCGCC 123038 || |||||||||||||| | |||||||| ||||||| || || ||||| |||| Sbjct 95514 ACCTACGATTTGATGTCGAATGGCTTTTTCACCCACGCGACCCCGACGTTGTTTAACGCC 95573 Query 123039 GGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACCTTGCGCGAAGACAGCATC 123098 ||||| || ||| || ||| || ||||| | | || || ||||| || Sbjct 95574 GGCACCCCCCGTCCGCAGATGAGTTCCTGCTTTTTAATAGCGATGAAGGAGGACAGTATT 95633 Query 123099 ACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATTTCCAAATTTGGCGGCGGCATA 123158 || || || || |||||| || ||||| ||||| ||| | || || || Sbjct 95634 GAAGGGATTTACGACACTTTGAAGGAGTGCGCCGTGATTAGCAAGGCAGCAGGGGGGATT 95693 Query 123159 GGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGCATCAGAAGCACCGACGGAATC 123218 || || |||| ||| || | ||| | |||||| ||| | || |||||| Sbjct 95694 GGACTGCACGTTCACAACATTCGAGCCTCCGGAAGTTATATCGCCGGGACGAACGGAACT 95753 Query 123219 GCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAG 123278 | |||| | | | |||||||| |||| |||||| ||| || | ||||| || Sbjct 95754 TCGAACGGGTTGGTGCCGATGCTGCGGGTTTTTAATAACACCGCACGTTATGTCGATCAA 95813 Query 123279 GGCGG---CAAACGCAAAGGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTG 123335 || || |||||||||||| || | ||| | ||||| || || ||||| | ||| | Sbjct 95814 GGAGGGGGCAAACGCAAAGGGGCATTTGCGGTTTATCTGGAGCCCTGGCATGCGGATATT 95873 Query 123336 TACGATTTTTTAAATTTAAAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTG 123395 | ||| ||| | | ||||| || |||| ||| ||| || || || || ||| | Sbjct 95874 TTCGAGTTTGTCATGTTAAAGCGGAACACCGGGAAGGAGGATCAGCGGGCGCGTGATCTT 95933 Query 123396 TTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGG 123455 || |||| | ||| |||| ||| | |||||| ||||| || ||| || |||| Sbjct 95934 TTTTACGGGCTTTGGATACCTGATCTTTTTATGGAGCGCGTGAAGAGCGAGGGGACGTGG 95993 Query 123456 TCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGAC 123515 || | ||| |||| | ||||| || ||||||| ||| || | ||||||| Sbjct 95994 ACGTTGATGGATCCCCACACCTGTCCGGGGCTGAGCGATTGTTATGGGGAGGAGTTTGAG 96053 Query 123516 GAGTTGTACGCGCAATACGA-GCGCGAAGGCAAACAGGTTAGTCAGGTTCCGGCACGTGA 123574 |||||| || || ||||| | | ||| | | ||| ||| | || Sbjct 96054 CGGTTGTATAAAAGTTATGAGGCGCGTCAG-ATGGGGGTGCGCACGATTCAGGCGCAGGA 96112 Query 123575 TTTGTTCAAATTT---ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTA 123631 ||| ||| ||| | || || ||| |||| || || ||| | |||||||| Sbjct 96113 GCTGT---GGTTTGCGATTTTGGAGACCCAAATCGAGACGGGGGTGCCTTTTATGCTCTA 96169 Query 123632 CAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAA 123691 ||||||||| ||||| | || | || || | || | || || || ||||| || Sbjct 96170 CAAAGACGCGTGCAATCGAAAGTCGAACCAAAAACACATCGGGACGATTAAATGCTCGAA 96229 Query 123692 TCTTTGCTCCGAAATTATCGAATACAGCGATGCC--GATCAAGTGGCCGTGTGTAATTTG 123749 | | || |||||||| | ||||||| || || || || || ||||| |||||| Sbjct 96230 TTTGTGTACCGAAATTGTGGAATACA--CATCCCCGGAGCAGACAGCGGTGTGCAATTTG 96287 Query 123750 GCTTC 123754 || || Sbjct 96288 GCCTC 96292 >seq5 Length=1237164 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| | |||||| || |||||||||||||| || || ||| || || | || || Sbjct 1116665 CACCAAATGCAGTGTGGATTCCTTTTGGATGTTGTAGTCGGCGAGAGTACGACCCTCCTC 1116724 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 ||| ||||| ||||| | |||| || |||||||| || ||||| || || || ||||| Sbjct 1116725 CAACTGTTTGCCTGCAAAAATCAGCCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTG 1116784 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 || || || | || | || | |||||| || ||| || ||||| | | || | Sbjct 1116785 GATCTTCGCCTTTA-CGTTATCAATAGTGTCGCTAGCCTCTACCTCGAGCGCTATTGTCT 1116843 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || ||||| || || || || || ||||| Sbjct 1116844 TCCCTGTTAGTGTCTTCACGAAGATCTGCAT 1116874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002725396640