Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1 120 4e-22 seq8 107 2e-18 >seq1 Length=2329561 Score = 120 bits (132), Expect = 4e-22 Identities = 246/363 (68%), Gaps = 2/363 (1%) Strand=Plus/Minus Query 116235 CAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATT 116294 || |||||| ||| || || || ||||| || | || || ||||||| ||||||| Sbjct 96494 CAGAATAAAAGTATCGGCAAGCCCCTGGACGCCTATCCCGATCGGGCGATAATTCATATT 96435 Query 116295 AGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTT 116354 | || || |||||||| || || | |||| ||||| | ||| || || | Sbjct 96434 GCTCCGCCGCGCCGTCTCCACTGGGTAGTAGGAATTATCAATAACGCGATTAAGGTTGTA 96375 Query 116355 GGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCAT 116413 |||||| |||| |||| || | ||| || | | || ||| | |||| | | Sbjct 96374 GGTGACCTCCTTCGTGACCTCGTAGAGCAGTTGATGGTTGAAGACTT-GCTTCTCGACGT 96316 Query 116414 TGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAG 116473 ||| || || ||||||| || |||| ||| ||||| | |||| ||| | Sbjct 96315 CCACAAACCGCGGCAGGGCGAGGGAGGCCAAATTGCACACCGCTGTCTGCTCCGGGGATG 96256 Query 116474 TGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGAT 116533 |||| || | |||||| ||||||||||| || | ||||| || || | || ||||| | Sbjct 96255 TGTATTCCACAATTTCGGTACACAAATTCGAGCATTTAATCGTCCCGATGTGTTTTTGGT 96196 Query 116534 TTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGG 116593 | |||||| || ||||| || |||||||||||| | ||| ||||||||| |||||| Sbjct 96195 TCGACTTTCGATTGCACGCGTCTTTGTAGAGCATAAAAGGCACCCCCGTCTCGATTTGGG 96136 Query 116594 ACT 116596 || Sbjct 96135 TCT 96133 Score = 86.0 bits (94), Expect = 8e-12 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 |||||||| ||||| ||||||||||| |||| | |||| || | |||||| || | Sbjct 97174 CGGAGGTAATACATGCCCGTCTTGAGGCCCTTTTCCCAGCAGTAGAAATGCATAGACGTA 97115 Query 115618 A-ACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAA 115676 | || ||| | ||||||||||| || || |||| || |||||||| ||| | Sbjct 97114 ATACGCCCGGAG-GAAGGACTTTCCATAAAAAGATTCAACGACTGCGATTGATCAATGTA 97056 Query 115677 GCGTCCC-CGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTC 115735 | |||| |||||||| ||||| | ||||||||| | ||| ||||| || ||| Sbjct 97055 -CTTCCCACGATCCGCGGCCATCTGGATCACATCCCGCTGTGAGATCTCCCAGACGGTTT 96997 Query 115736 TGTAGAGGTTCTT 115748 ||||||| || || Sbjct 96996 TGTAGAGTTTTTT 96984 >seq8 Length=1060349 Score = 107 bits (118), Expect = 2e-18 Identities = 304/460 (66%), Gaps = 14/460 (3%) Strand=Plus/Minus Query 127221 CCAGCTTGCCG-TAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTG 127279 ||||||| | | || || || |||| ||||||||||||||| ||||| || | || | Sbjct 1001179 CCAGCTTTCTGATACTCGCCAACCCTCTTCTCGAAGAAGTTAGTCTTTCCTTGAAGCGAG 1001120 Query 127280 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGT 127339 || ||||||| || || || || || | | ||| || || | |||| | Sbjct 1001119 ATCATCTCCATGAAGTCGAACGGATTTGTAGCGTTGTAATGCTTTTCTTCACCAAGCGCA 1001060 Query 127340 TTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCG 127399 |||| ||||| |||| || |||| ||||||| |||| ||| |||||||| || Sbjct 1001059 ATGAGAAGACGGTCCGCAACAAACTCGATGTACTGTCCCATCAACTCGGAGTTCATCCCA 1001000 Query 127400 ATGAGGT-TACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCG 127458 || | |||| || | ||| || | || ||| | | ||| |||||||| || | | Sbjct 1000999 ATCAAACGTACA-GGCAACGCATCGCAAATAAACTCGTGCTCGATGTCCACCGCATTCGT 1000941 Query 127459 TACGATGGCGTGAATAGTGTCCACCCCAGGTCTATTG--CGTAAAGTCTTGAAGAGTTCC 127516 | ||| | | | | | || |||| ||| | | | || ||| |||| | Sbjct 1000940 GATGATCTCCAGCACACG---CGACCGAGGTAGTTTGTTCTTGATGTGGTGA-GAGTACA 1000885 Query 127517 ACA-----GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGC 127571 ||| ||||| || ||| | ||||| || || ||||| ||||| || |||| Sbjct 1000884 ACAAACACGCAAAGTCCGTGTGCAACCCCTCATCGCGCGAGATCAGTTCGTTGCTGAAGG 1000825 Query 127572 ACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGA 127631 || || ||||| | || ||||| || | |||||| | ||||||||||| || || | Sbjct 1000824 TTAGCCCAGGCATCACGCCGCGCTTTTTGAGCCAGAACAGTGCACAAAATGACCCTGAAA 1000765 Query 127632 AGAAGATCCCCTCCACACACGCGAACGCAAATAGACGCTC 127671 ||||||| ||||||||| || ||||| | || ||||| Sbjct 1000764 AGAAGATACCCTCCACAGCTGCAAACGCGATCAGGCGCTC 1000725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506555817440