Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq7 95.1 3e-14 seq14 86.0 1e-11 seq5 86.0 1e-11 >seq7 Length=1072466 Score = 95.1 bits (104), Expect = 3e-14 Identities = 152/218 (70%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | || || || || ||||| |||| ||||| || || | || | ||| || Sbjct 364059 AGGACCAAATGCAGGGTGGATTCCTTCTGGATATTGTAATCGGCGAGCGTGCGTCCCTCC 364118 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || ||||| || || ||||| ||||| ||| || ||||| ||| Sbjct 364119 TCCAACTGCTTGCCCGCGAAAATCAGGCGCTGTTGGTCAGGAGGGATGCCTTCCTTGTCC 364178 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| |||||| || | || || | | || || || | || ||||||| Sbjct 364179 TGAATCTTCGCCTTCACATTGTCAATCGTATCGCTGGCCTCGACCTCGAGCGCGATCGTC 364238 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || ||||| | || ||||| ||||| || |||||| Sbjct 364239 TTGCCCGTCAACGTCTTCACGAAAATCTG---CATTTT 364273 >seq14 Length=332912 Score = 86.0 bits (94), Expect = 1e-11 Identities = 150/218 (69%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | || || || || ||||| |||| |||||| || || | || | || || Sbjct 28289 AGGACCAAATGCAGGGTGGATTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCCTCC 28230 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||| || || ||||| || || || ||||||||||| || || || ||| Sbjct 28229 TCCAACTGTTTGCCCGCGAAAATCAGGCGTTGCTGGTCCGGGGGGATCCCCTCCTTGTCC 28170 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| |||| || || | | || || || | || ||||||| Sbjct 28169 TGGATCTTCGCCTTCACGTTGTCGATCGTATCGCTGGCCTCGACCTCGAGCGCGATCGTC 28110 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || ||||| | || ||||| || || || |||||| Sbjct 28109 TTGCCCGTCAACGTCTTCACGAAGATCTG---CATTTT 28075 >seq5 Length=1237164 Score = 86.0 bits (94), Expect = 1e-11 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || || |||||||||| ||||||||| || | ||| | || ||||||| ||| Sbjct 1116444 TGCAGTGTGGATTCCTTTTGGATGTTGTAGTCGGCGAGAGTACGACCCTCTTCCAACTGT 1116503 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || || || || || ||||||||||| || ||| || || || || ||||| Sbjct 1116504 TTGCCTGCAAAAATCAGCCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGGATCTTC 1116563 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| ||| || | ||||| | | ||||| || | || || ||||| || || Sbjct 1116564 GCCTTTACGTTATCAATAGTGTCGCTAGCCTCTACCTCAAGCGCTATTGTCTTCCCTGTT 1116623 Query 199607 AGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || Sbjct 1116624 AGCGTCTTCACGAAGATCTG 1116643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178920331185628