Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq7 116 4e-21 seq5 109 6e-19 >seq7 Length=1072466 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||||| || ||||| ||||||||||| |||| || ||||| | || || Sbjct 364062 ACCAAATGCAGGGTGGATTCCTTCTGGATATTGTAATCGGCGAGCGTGCGTCCCTCCTCC 364121 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | ||||||||| ||||| |||| |||||| ||||| | || | || ||||||||| Sbjct 364122 AACTGCTTGCCCGCGAAAATCAGGCGCTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGA 364181 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 |||||| ||| | | | | ||| ||||| | || || || | || ||| || ||| Sbjct 364182 ATCTTCGCCTTCACATTGTCAATCGTATCGCTGGCCTCGACCTCGAGCGCGATCGTCTTG 364241 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 ||||||| ||| || || || || |||||||| Sbjct 364242 CCCGTCAACGTCTTCACGAAAATCTGCATTTT 364273 >seq5 Length=1237164 Score = 109 bits (120), Expect = 6e-19 Identities = 167/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 46356 TATATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATAT 46415 || ||| || ||| || | || || | ||||| ||||| ||| ||||||||||| | Sbjct 1116409 TAGATTTTTAGCCGCCACGTAGGCGAAGCACCAAATGCAGTGTGGATTCCTTTTGGATGT 1116468 Query 46416 TGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCT 46475 ||||||||| ||||| || | || || | ||| ||||| || || |||| ||||||| Sbjct 1116469 TGTAGTCGGCGAGAGTACGACCCTCTTCCAACTGTTTGCCTGCAAAAATCAGCCGCTGCT 1116528 Query 46476 GGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGC 46535 |||| | || | | ||||||||| ||||||| ||| | | | | ||||||| Sbjct 1116529 GGTCTGGGGGAATACCCTCCTTGTCTTGGATCTTCGCCTTTACGTTATCAATAGTGTCGC 1116588 Query 46536 TCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | | || || || | || || || || || || ||||| || || ||||| ||||| Sbjct 1116589 TAGCCTCTACCTCAAGCGCTATTGTCTTCCCTGTTAGCGTCTTCACGAAGATCTGCAT 1116646 Score = 105 bits (116), Expect = 8e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||| | ||||| ||||| ||| ||||||||||| |||||||||| Sbjct 1116646 TGCCACCACGCAGACGGAGCACCAAATGCAGTGTGGATTCCTTTTGGATGTTGTAGTCGG 1116705 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 ||||| || | || || | ||| ||||| || || |||| ||||||||||| | | Sbjct 1116706 CGAGAGTACGACCCTCCTCCAACTGTTTGCCTGCAAAAATCAGCCGCTGCTGGTCTGGGG 1116765 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | ||||||||| ||||||| ||| | | | | |||||||| | || | Sbjct 1116766 GAATACCCTCCTTGTCTTGGATCTTCGCCTTTACGTTATCAATAGTGTCGCTAGCCTCTA 1116825 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTT 46595 | || | || || || || || || || || || || ||||| ||||||| Sbjct 1116826 CCTCGAGCGCTATTGTCTTCCCTGTTAGTGTCTTCACGAAGATCTGCATTT 1116876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237806499680