Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq8 255 6e-63 seq14 161 1e-34 seq5 149 6e-31 seq7 143 3e-29 >seq8 Length=1060349 Score = 255 bits (282), Expect = 6e-63 Identities = 612/911 (67%), Gaps = 16/911 (2%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 |||||| ||| ||| ||||| ||||| ||| | ||||| || || ||||| ||||| | Sbjct 1001186 CATCACACCAGCTTTCTGATACTCGCCAACCCTCTTCTCGAAGAAGTTAGTCTTTCCTTG 1001127 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710 | || || | | ||| || || || || || | | |||||| ||||| | Sbjct 1001126 AAGCGAGATCATCTCCATGAAGTCGAACGGATTTGTAGCGTTGTAATGCTTTTCTTCACC 1001067 Query 132711 CAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATT 132770 || | | ||| || | ||| || || ||||||||||| || ||| ||| | || Sbjct 1001066 AAGCGCAATGAGAAGACGGTCCGCAACAAACTCGATGTACTGTCCCATCAACTCGGAGTT 1001007 Query 132771 AAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGC 132830 | || | || ||| || |||| ||| ||| | ||| ||||||||| | ||||| Sbjct 1001006 CATCCCAATCAAACGTACAGGCAACGCATCGCAAATAAACTCGTGCTCGATGTCCACCGC 1000947 Query 132831 GTCGGTGACGATTTCCCTAACGCGCG-CCGCGCTCGGCCGTTGCACCAAATGCTT---GA 132886 | |||| ||| ||| || |||| ||| | | | ||| | | || | | Sbjct 1000946 ATTCGTGATGATCTCCAGCACACGCGACCGAGGTAGTTTGTT-CTTGATGTGGTGAGAGT 1000888 Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 ||| ||| || |||||||| ||||| ||||| || | || || ||||||||||||| Sbjct 1000887 ACAACAAACACGCAAAGTCCGTGTGCAACCCCTCATCGCGCGAGATCAGTTCGTTGCTGA 1000828 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCC- 133005 | || | || ||||| | |||||| ||||||||||| || | || | ||| ||| Sbjct 1000827 AGGTTAGCCCAGGCATCACGCCGCGCTTTTTGAGCCAGAACAGTGCA-CAAAATGACCCT 1000769 Query 133006 GAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCT 133065 |||||||||| ||||| || || || || || | ||||||||| ||| || || Sbjct 1000768 GAAAAGAAGATACCCTCCACAGCTGCAAACGCGATCAGGCGCTCCTGGAAACTGCTCTC- 1000710 Query 133066 TTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCG 133125 ||| | ||||| || | ||||| |||||||| | || || ||||| ||||| | Sbjct 1000709 --GCTCCCAATCCATCGTACAGCCCACTCGGCCTTATTTTGGATACACGGAATCGTCTGA 1000652 Query 133126 ATGGCGTTCAACAAACGGAGTTTCTCTTCC-GAGGAACGCACGTAGGTGTCGATGAGGGT 133184 || |||| || |||||| | ||||| ||| || | | ||| ||||| | || Sbjct 1000651 ATCGCGTGCAGCAAACGTAACTTCTCATCCTGATCCATA-ATGTACGTGTCCAGCAGCAC 1000593 Query 133185 CGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAA-GCACCGCG 133243 ||| ||| | || ||||| | |||||||| | ||||| ||||| || |||| ||| Sbjct 1000592 CGAGTACGTCTCTGAGTGAATATTCTCCATCATCAGCTGAAACCCGTAGAACGCAC-GCG 1000534 Query 133244 CCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGT 133303 |||| | | ||| || ||| |||| | || || ||| |||||||||||| Sbjct 1000533 CCTCTGGTATTTTCACGTCCGTCATGAAGCGCTGCGCGAGGTTCTCGATGACGATGCCGT 1000474 Query 133304 CGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGC 133363 |||| | ||||| || || |||||||||||||||||||| ||||| ||||||| Sbjct 1000473 CGCTTCCCGCGAAGAACGCAAGCACGTGCTTGATGAAATGTCGCTCCCCATCGTTCAGCT 1000414 Query 133364 GCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAA-ACGACGCC 133422 | ||||||| | | || || |||||| | ||| || || ||||||| || | | Sbjct 1000413 TCACCCAGTCCACCATATCGCTGCCCAGGTCGATCTCTTCCACCGTCCAAATACAGCTCT 1000354 Query 133423 TCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGG 133482 | || | |||||| | | ||| ||||| || || || || || || ||| ||||| Sbjct 1000353 CCTGC-TCCTTGTACTTTCGCCAGATGTCATGGTACTGAATCGGGAACATGACATACCGG 1000295 Query 133483 CGGGGGTTTTC 133493 || ||||| Sbjct 1000294 TACGGATTTTC 1000284 >seq14 Length=332912 Score = 161 bits (178), Expect = 1e-34 Identities = 179/236 (76%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 38236 TTaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCG 38295 ||| ||||||||| || ||||| || ||| | |||||||| || ||| | |||| |||| Sbjct 28070 TTATAAAAATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCGCGCTCGAGGTCG 28129 Query 38296 AGGCCACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCC 38354 |||||| ||| | | | |||| | || | || |||| ||||| ||||| || ||| Sbjct 28130 AGGCCAGCGATACGATCGACAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCC 28188 Query 38355 GCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC 38414 | ||||| || || || |||| ||||||||||||| |||| || | ||||| ||| | Sbjct 28189 CCGGACCAGCAACGCCTGATTTTCGCGGGCAAACAGTTGGAGGAGGGCCGCACGCTCGCC 28248 Query 38415 GACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||||||||| |||||| | || ||||||||||| || ||| || | ||||| Sbjct 28249 GATTACAACATCCAGAAGGAATCCACCCTGCATTTGGTCCTCCGTCTGCGTGGCGG 28304 >seq5 Length=1237164 Score = 149 bits (164), Expect = 6e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38242 aaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCA 38301 ||||||| || ||||| || || || || || || || || | |||| || ||||| | Sbjct 1116876 AAATGCAGATCTTCGTGAAGACACTAACAGGGAAGACAATAGCGCTCGAGGTAGAGGCTA 1116817 Query 38302 CCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 ||||| | | |||| | || | || |||| ||||| ||||| |||||| | ||| Sbjct 1116816 GCGACACTATTGATAACG-TAAAGGCGAAGATCCAAGACAAGGAGGGTATTCCCCCAGAC 1116758 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || |||||||| |||| || ||||||||| |||| || | || || ||| ||||||| Sbjct 1116757 CAGCAGCGGCTGATTTTTGCAGGCAAACAGTTGGAGGAGGGTCGTACTCTCGCCGACTAC 1116698 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||||||||| | || |||||||||||||| ||| || | || ||| Sbjct 1116697 AACATCCAAAAGGAATCCACACTGCATTTGGTGCTCCGTCTGCGTGGTGGC 1116647 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || || || || || | | || || ||||| | | Sbjct 1116646 ATGCAGATCTTCGTGAAGACGCTAACAGGGAAGACAATAGCGCTTGAGGTAGAGGCTAGC 1116587 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || |||| ||||| ||||| |||||| | ||||| Sbjct 1116586 GACACTATTGATAACG-TAAAGGCGAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCA 1116528 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||||| |||| || ||||||||| |||| || | || || ||| ||||||||| Sbjct 1116527 GCAGCGGCTGATTTTTGCAGGCAAACAGTTGGAAGAGGGTCGTACTCTCGCCGACTACAA 1116468 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||||||| | || |||||||||||||| || | | |||||| Sbjct 1116467 CATCCAAAAGGAATCCACACTGCATTTGGTGCTTCGCCTACGTGGCGGC 1116419 >seq7 Length=1072466 Score = 143 bits (158), Expect = 3e-29 Identities = 173/233 (74%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 38239 aaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGG 38298 |||||||||| || ||||| || ||| | |||||||| || ||| | |||| ||||||| Sbjct 364275 AAAAAATGCAGATTTTCGTGAAGACGTTGACGGGCAAGACGATCGCGCTCGAGGTCGAGG 364216 Query 38299 CCACCGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC 38357 ||| ||| | | || || | | || | || || | ||||| || || || || | Sbjct 364215 CCAGCGATACGATTGACAATG-TGAAGGCGAAGATTCAGGACAAGGAAGGCATCCCTCCT 364157 Query 38358 GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 38417 ||||||||||| || |||| ||||||||| ||| |||| || | ||||| ||| ||| Sbjct 364156 GACCAACAGCGCCTGATTTTCGCGGGCAAGCAGTTGGAGGAGGGACGCACGCTCGCCGAT 364097 Query 38418 TACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| |||||| | || ||||||||||| || ||| || | || || Sbjct 364096 TACAATATCCAGAAGGAATCCACCCTGCATTTGGTCCTCCGTCTGCGCGGGGG 364044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172274818560