Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq4 334 1e-86 seq3 116 5e-21 seq1 109 7e-19 >seq4 Length=1647180 Score = 334 bits (370), Expect = 1e-86 Identities = 1029/1579 (65%), Gaps = 23/1579 (1%) Strand=Plus/Minus Query 6584 TACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATCA 6643 ||||| | ||||| | ||||||| ||| || || | || | | ||||| ||| Sbjct 981650 TACTTGGCGGCATCATTGACCATCCGTTCGATTTCAGCCTTGCTGAGGCGACCCTTGTCA 981591 Query 6644 TTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAAA 6703 || || || || |||| | | || || | | |||| || || || | || |||| | Sbjct 981590 TTGGTGATGGTGATCTGGTTGCGCTTGCCGGTGCCCTTGTCCTCGGCCGTCACGTTCAGA 981531 Query 6704 ATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCT 6763 || || || || ||||| ||||| | || | || || || ||| | || || | Sbjct 981530 ATGCCGTTGGCGTCAACGTCGAAGGTGACCTCGATCTGCGGCACACCACGAGGCGCCGGG 981471 Query 6764 GGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTCA 6823 || || || | | || || || || || | | ||| ||| | || ||||||| Sbjct 981470 GGGATCCCAGAGAGGTCGAAGGTCCCGAGCAGGTGGCAGTCCTTCGTCATCGTACGTTCT 981411 Query 6824 CCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTGT 6883 ||||| |||| | ||| ||| | || || ||||| || ||| ||||||| || Sbjct 981410 CCTTCGAAGACCTGAATGTGCACGCCGGGCTGGTTATCCTGGTACGTCGAGAAGACCTGG 981351 Query 6884 TCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATA 6943 | ||||| | || |||||| | || | | || | || ||||| || || || Sbjct 981350 CCCTTCTTGGTCGGGATCGTCATGTTGCGCTTGATGAGCGACGTCATGATGCCGCCGGCC 981291 Query 6944 GTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCG 7003 || |||| || || | || || |||||||||| || | |||| | | | | | Sbjct 981290 GTCTCGATCCCGAGCGTGAGCGGGGTCACGTCCAGCAGCAGCAGGCCCTC--CGTCTGCT 981233 Query 7004 TTCCCTT--CACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCAT 7061 | | ||| | || || | |||| || || || | ||| ||||| || || || || | Sbjct 981232 TGCTCTTGCCGCCGGTCAGGATGAACGCCTGCACGGCCGCACCGTACGCAACGGCTTCGT 981173 Query 7062 CGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAA 7121 ||||||| || | || ||||| || || || ||| | || || | || || | Sbjct 981172 CGGGGTTGATGCTCTTGTTCAGCTCCTTGCCACCGAAAAAGTCGGAGACCAGCGACTGTA 981113 Query 7122 TTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGA 7181 || || || ||||| || || ||||| | |||| || | ||| || || | Sbjct 981112 CCTTGGGAATACGTGTGGAGCCGCCGACGAGCACGACCTCGTGCACAGCACGCTTGTCCA 981053 Query 7182 TCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATAC 7241 |||| ||||| | || ||||| || || ||| || ||||| | ||| | | Sbjct 981052 TCTTGGAGTCCTGGAGGACGCGCTCGACGGGATCGATAGTCTTGCGGAAGAGGTCGCTGC 980993 Query 7242 ACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACG 7301 |||| ||||| || || |||||||| ||| | | ||| |||| || ||| | | || Sbjct 980992 ACAGCTCCTCGAAGCGGGCACGGGTGATGTTGGACTGGAAGTCAATGCTATCGAAGAGCG 980933 Query 7302 AATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361 || || || ||||| | ||| | || || || | || ||||| ||||| || |||| Sbjct 980932 CGTCGATCTCGATGGTGGCTTGCGTCGCAGAGGACAGGGTGCGCTTGGCGCGTTCGCACG 980873 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTA---C 7418 | || || | || || || | ||| || | ||| ||||| ||| | | || | Sbjct 980872 CGGTGCGCAGGCGGCGCAGCGAGCGCTGGCTCGAGGACATATCCTTCCCACGGTTCTTGC 980813 Query 7419 GTTTAAACTCTTCAG---AGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCA 7475 | | ||||| || |||||| || | |||| || | || ||||| || | Sbjct 980812 GCCTGAACTCATCGCTGAAGAAGT-TC--ACCAGTCGGTTGTCAAGGTCCTCACCGCCGA 980756 Query 7476 AGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACG 7535 || || || || ||||| || || ||||| ||||| || || || || | | ||||| Sbjct 980755 GATGGGTGTCGCCGGCGGTTGCCTTCACTTCGAAGATGCCGCCATCGATCGTCAGCAACG 980696 Query 7536 AAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCG---TCTT 7592 ||||| ||||| || || || ||||| || ||||| ||||| || | | || Sbjct 980695 TGACATCGAACGTGCCGCCGCCAAGGTCGAAGATGAGGACGTTGAGCTCCTGGCTCTCCG 980636 Query 7593 TGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGAC 7652 || ||| ||||| ||||||||||| ||||| ||||| || || || || || || || | Sbjct 980635 TGCACTTGTCGAGGCCGTACGCGATGGCCGCAGCCGTCGGCTCGTTGATGATGCGCAG-C 980577 Query 7653 AGTTC-AGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAG 7711 | || || |||||||| | || || || || || || || ||||| ||||| ||| Sbjct 980576 ACCTCAAGCCCAGCAATCACACCGGCGTCCTTGGTGGCCTGACGCTGCGAGTCGTTGAAG 980517 Query 7712 TAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATA 7771 || || || ||||| | ||||| | | | || | ||| || || ||||| ||||| || Sbjct 980516 TACGCAGGAACCGTGATCACCGCTTTCTTCACCTGCTTCCCAAGGTACGACTCCGCCGTA 980457 Query 7772 TCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCA 7831 || ||||| || || |||||||| ||||| || | | ||| || || Sbjct 980456 TCCTTCATCTTCACCAGCACCATCGAGCTGATCTCCTCCGGTGTGAACGTCTTATCCTCG 980397 Query 7832 CCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC-CGGGGATAACCTTATACGA 7890 |||| || ||| | |||| || || | || |||| | | ||||| | | Sbjct 980396 CCGTGGAACGAAACCTGGATCAGCGGCTTGT-CGTCGCACTTCGTCACCACCTTGAAGGG 980338 Query 7891 CCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTT 7950 ||| | ||||| ||| || ||| ||||| || || | ||||| || ||||| Sbjct 980337 CCAGTGCTTCATGTCGAGCTGCACCAAGTGGTCTTTGAAGTTCCGCCCGATGAGGCGCTT 980278 Query 7951 TGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGAT 8010 || || || || ||||||| ||||||||||| |||||||| || || || || || Sbjct 980277 CGCGTCGAAGACGGTGTTTTGCGGGTTCATGGCGACCTGGTTCTTGGCAGCATCACCAAT 980218 Query 8011 AAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTC 8070 || | || ||| || || || || || || ||||| |||||||| || || || || Sbjct 980217 TAGCCTCTCGTTA---TCAGTGAAGGCCACATAGGATGGCGTCGTTCGGTTGCCCTGATC 980161 Query 8071 GTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCC 8130 |||||| || || || || || ||||||||||| || || ||||| || ||||| || || Sbjct 980160 GTTCGCGATGATCTCCACACGCTCGTTTTGCCACACACCTACGCATGAGTACGTCGTGCC 980101 Query 8131 TAAATCAATACCGATTGCT 8149 | |||||| || || ||| Sbjct 980100 CAGATCAATGCCAATAGCT 980082 Score = 170 bits (188), Expect = 2e-37 Identities = 261/370 (71%), Gaps = 8/370 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || || || || | ||| || || || |||||||| |||| || || | || Sbjct 1310094 TCGAAGTCCTCGCCGCCGAGGTGGGTGTCGCCGGCGGTCGCGATGACCTCGAAAAAGCCC 1310153 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || || | | ||| || || ||||| || || || || ||||| || | ||| | | Sbjct 1310154 TCGTCGATCGTCAGCAAGGAGACGTCAAAGGTGCCGCCGCCGAGGTCGAAGACGAGGATG 1310213 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| | || || |||||||| || ||||||||||| |||||||| || || || Sbjct 1310214 TTCTTCTCCCCGGCTTTGTTC------AGCCCGTACGCGATGGCCGCCGCTGTCGGCTCG 1310267 Query 7637 TTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 |||||||| || | |||| ||||| || ||||| || |||| || || |||| || || Sbjct 1310268 TTAATAATGCGCACGACA-TTCAGCCCGGCAATCGTCCCCGCGTCCTTGGTCGACTGCCG 1310326 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 |||| |||||| || || || ||||| || || || |||| | |||||| | ||||| Sbjct 1310327 TTGCCCATCGTTGAAATACGCAGGGACTGTCACCACGGCGTTCTCCACTTTCGTCCCGAG 1310386 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815 | ||| || | ||| || ||||||||| | || |||||| ||||| || | || Sbjct 1310387 AAACGTCTCTGAGATTTCCTTCATTTTGAGCAAAATCATCGAGCTGATCTCCTCCGGCGT 1310446 Query 7816 AAACTGTTTC 7825 || || ||| Sbjct 1310447 GAATTGCTTC 1310456 >seq3 Length=1974834 Score = 116 bits (128), Expect = 5e-21 Identities = 206/299 (69%), Gaps = 6/299 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || ||||| |||| ||| || || || ||||| || || ||||| | ||| Sbjct 1717135 TCGAAGTCCTCACCGCCCAGGTGCGTGTCGCCGTTCGTCGCCTTCACCTCAAACACACCC 1717194 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||| | || | | | ||| | ||| ||||| ||||| || ||||| | | | | Sbjct 1717195 CCTGCGATCTCGAGAATCGAGATATCGAACGTGCCACCGCCGAGGTCGTACACGGCAATC 1717254 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 |||||| ||| || ||| || | |||||||| | ||||||||||| || || Sbjct 1717255 AGCGTATC-----CTTCGT-CTTGTCCATCCCGTACGCAAGCGCCGCCGCCGTCGGCTCG 1717308 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || | | ||||| ||||| || || || || ||||||| ||||| || ||||| Sbjct 1717309 TTCACCACACGAATCACGTTCATCCCCGCGATCGTCCCCGCATCCTTCGTTGCCTGTCGC 1717368 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 |||| ||||| || || |||||| ||| || ||||||| | || ||||| ||||| Sbjct 1717369 TGCGCGTCGTTGAAATACGCCGGGCACGTCACCACCGCGTTGCTCACCTTCTTTCCGAG 1717427 >seq1 Length=2329561 Score = 109 bits (120), Expect = 7e-19 Identities = 93/115 (81%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 105286 TCCAGAATTTCTGTACACAAATTTGATGATTTAATCGTACCAACGTGTTTATGGTTCGAC 105345 |||| |||||| ||||||||||| || |||||||||| || | |||||| ||||||||| Sbjct 96250 TCCACAATTTCGGTACACAAATTCGAGCATTTAATCGTCCCGATGTGTTTTTGGTTCGAC 96191 Query 105346 TTTTCATTACACGCGTCTTTGTAAAGCATATATGGGGTTCCCGTTTCACTTTGGG 105400 ||| ||| |||||||||||||| |||||| | || ||||| || |||||| Sbjct 96190 TTTCGATTGCACGCGTCTTTGTAGAGCATAAAAGGCACCCCCGTCTCGATTTGGG 96136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132133110560