Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq8 82.4 9e-11 seq1 82.4 9e-11 >seq8 Length=1060349 Score = 82.4 bits (90), Expect = 9e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 ||||| || |||| ||||| ||| |||||||||||||| || || || || || || Sbjct 1000725 GAGCGCCTGATCGCGTTTGCAGCTGTGGAGGGTATCTTCTTTTCAGGGTCATTTTGTGCA 1000784 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 | | |||||||| ||||| || | ||||| || || |||| |||||| || ||| Sbjct 1000785 CTGTTCTGGCTCAAAAAGCGCGGCGTGATGCCTGGGCTAACCTTCAGCAACGAACTGATC 1000844 Query 102300 TCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 102332 || || || ||||| | ||| || |||||| Sbjct 1000845 TCGCGCGATGAGGGGTTGCACACGGACTTTGCG 1000877 >seq1 Length=2329561 Score = 82.4 bits (90), Expect = 9e-11 Identities = 115/158 (73%), Gaps = 10/158 (6%) Strand=Plus/Plus Query 113180 GGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTA--TG 113237 |||||| || | |||||||| |||||||| | |||||||||| || ||| || Sbjct 97022 GGATGTGATCCAGATGGCCGCGGATCGTGGGAAGTACATTGATCAA--TCGCAGTCGTTG 97079 Query 113238 AATCTATTCATGGAAAGTCCAACGATGTCCAAGC---TCTCTTCTATGCACATGTACAGT 113294 ||||| || ||||||||||| | ||| || | | |||||||| | ||| | Sbjct 97080 AATCTTTTTATGGAAAGTCCTTCC---TCCGGGCGTATTACGTCTATGCATTTCTACTGC 97136 Query 113295 TGGAAGAAGGGTCTCAAAACGGGGATGTATTACCTCCG 113332 ||| | ||||| ||||| ||||| |||||||||||||| Sbjct 97137 TGGGAAAAGGGCCTCAAGACGGGCATGTATTACCTCCG 97174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741748220480