Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1 105 8e-18 seq8 100 3e-16 seq4 86.0 7e-12 >seq1 Length=2329561 Score = 105 bits (116), Expect = 8e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || ||||||| || ||||||||||| || || |||| ||| |||||| || | | Sbjct 96304 GGCAGGGCGAGGGAGGCCAAATTGCACACCGCTGTCTGCTCCGGGGATGTGTATTCCACA 96245 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 ||||| |||||||| || || | ||||||||||| | | |||||||| |||| Sbjct 96244 ATTTCGGTACACAAATTCGAGCATTTAATCGTCCCGATGTGTTTTTGGTTCGACTTTCGA 96185 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTC 106617 |||||||| || ||||||||||| | ||| ||||||||| Sbjct 96184 TTGCACGCGTCTTTGTAGAGCATAAAAGGCACCCCCGTCTC 96144 >seq8 Length=1060349 Score = 100 bits (110), Expect = 3e-16 Identities = 303/458 (66%), Gaps = 19/458 (4%) Strand=Plus/Minus Query 116979 TTTCCCATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTT 117038 |||| ||| || ||||| | |||||| |||||||| ||||| || | ||| || | Sbjct 1001174 TTTCTGATACTCGCCAACCCTCTTCTCGAAGAAGTTAGTCTTTCCTTGAAGCGAGATCAT 1001115 Query 117039 TTCCATAAAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACC-CCAACTTGTTTGA 117097 ||||| ||||| || ||||| | ||||| || || | | | |||| ||| Sbjct 1001114 CTCCATGAAGTCGAACGGATTTGTAGCGTTGTAA-TGCTTTTCTTCACCAAGCGCAATGA 1001056 Query 117098 GGAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGA 117157 | ||||| |||| ||| |||| ||||||| |||| ||| |||||||| || || | Sbjct 1001055 GAAGACGGTCCGCAACAAACTCGATGTACTGTCCCATCAACTCGGAGTTCATCCCAATCA 1000996 Query 117158 GAT-TACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACG 117216 | |||| || | || || | || ||| | | ||| || || ||||| | | | | Sbjct 1000995 AACGTACA-GGCAACGCATCGCAAATAAACTCGTGCTCGATGTCCACCGCATTCGTGATG 1000937 Query 117217 ATGGCGTGGATA-GTTTC---GGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCAC 117272 || | | | | | | |||||| || | || | || ||| ||| | || Sbjct 1000936 ATCTCCAGCACACGCGACCGAGGTAGTTTGT-TCTTG----ATGTGGTGA-GAGTACAAC 1000883 Query 117273 G-----GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCAT 117327 ||||| ||| ||| | |||||||| || || || ||||| || |||| | Sbjct 1000882 AAACACGCAAAGTCCGTGTGCAACCCCTCATCGCGCGAGATCAGTTCGTTGCTGAAGGTT 1000823 Query 117328 AGGCCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAG 117387 || || ||||| | || ||||| || | ||| | | || || |||||||| || ||| Sbjct 1000822 AGCCCAGGCATCACGCCGCGCTTTTTGAGCCAGAACAGTGCACAAAATGACCCTGAAAAG 1000763 Query 117388 AAGATACCCTCCACACACGCAAACGCAAAAAGGCGCTC 117425 ||||||||||||||| |||||||| | |||||||| Sbjct 1000762 AAGATACCCTCCACAGCTGCAAACGCGATCAGGCGCTC 1000725 >seq4 Length=1647180 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 136166 TCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCA 136225 || |||||||||||||| ||||||| ||||||||||||| | ||||| ||||| ||||| Sbjct 173913 TCCTATAGTGTAGTGGTTATCACTTCGGACTTTGAATCCGAAAACCCAGGTTCGAATCCT 173972 Query 136226 GGTAGGA 136232 ||||||| Sbjct 173973 GGTAGGA 173979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980180520160