Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq14 98.7 6e-16 seq5 98.7 6e-16 >seq14 Length=332912 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| || | ||| ||| ||||| ||||| || || | || | || | || ||| Sbjct 28286 ACCAAATGCAGGGTGGATTCCTTCTGGATGTTGTAATCGGCGAGCGTGCGGCCCTCCTCC 28227 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | |||||| || || || || || ||||||||||| | || | |||||||||||| Sbjct 28226 AACTGTTTGCCCGCGAAAATCAGGCGTTGCTGGTCCGGGGGGATCCCCTCCTTGTCCTGG 28167 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| || ||| | |||| || | |||||| || |||| | || || || Sbjct 28166 ATCTTCGCCTTCACGTTGTCGATCGTATCGCTGGCCTCGACCTCGAGCGCGATCGTCTTG 28107 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||||| | |||||||| ||||||||||| || Sbjct 28106 CCCGTCAACGTCTTCACGAAGATCTGCATTTT 28075 >seq5 Length=1237164 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| || | |||| ||| || || ||||| ||||| | || | || | || ||| Sbjct 1116666 ACCAAATGCAGTGTGGATTCCTTTTGGATGTTGTAGTCGGCGAGAGTACGACCCTCCTCC 1116725 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | |||||| || ||||| || || || ||||||||| | || | ||||||||||| Sbjct 1116726 AACTGTTTGCCTGCAAAAATCAGCCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGG 1116785 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| || ||| | || | || | ||||| || |||| | ||| || || Sbjct 1116786 ATCTTCGCCTTTACGTTATCAATAGTGTCGCTAGCCTCTACCTCGAGCGCTATTGTCTTC 1116845 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || |||||||| ||||||||||| Sbjct 1116846 CCTGTTAGTGTCTTCACGAAGATCTGCAT 1116874 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| || | |||| ||| || || ||||| ||||| | || | || | || ||| Sbjct 1116438 ACCAAATGCAGTGTGGATTCCTTTTGGATGTTGTAGTCGGCGAGAGTACGACCCTCTTCC 1116497 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | |||||| || ||||| || || || ||||||||| | || | ||||||||||| Sbjct 1116498 AACTGTTTGCCTGCAAAAATCAGCCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGG 1116557 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| || ||| | || | || | ||||| || || | | ||| || || Sbjct 1116558 ATCTTCGCCTTTACGTTATCAATAGTGTCGCTAGCCTCTACCTCAAGCGCTATTGTCTTC 1116617 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || |||||||| ||||||||||| Sbjct 1116618 CCTGTTAGCGTCTTCACGAAGATCTGCAT 1116646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633267656352