Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq11 134 1e-26 >seq11 Length=614005 Score = 134 bits (148), Expect = 1e-26 Identities = 385/588 (65%), Gaps = 12/588 (2%) Strand=Plus/Plus Query 29799 CTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTC 29858 |||||| | | ||||||| ||||| || || || || |||||||| || | ||| Sbjct 409192 CTTCAGTGCTGAAACGTGATTTTTGTAGATATGCGCATCCCCAAGGGTGTGTACGAGCTC 409251 Query 29859 TCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGAT 29918 ||| || | || ||| || | | || |||| || | || | ||| ||||| Sbjct 409252 TCCGGGCTTTAACCCAGTCGCCTTCGCGATCAGAATTGTCAAAAGGGCGTAAGAAGCGAT 409311 Query 29919 GTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC 29978 |||||||| || || |||||||| || | || | ||||| ||| ||||||||||| Sbjct 409312 ATTAAAGGGCACGCCAAGCCCCATATCGCAGGAGCGTTGGTAAAGCATGCACGAGAGCTC 409371 Query 29979 -TCCGTCGC-----TCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATG-- 30030 | |||| | ||||||| ||||| | | || || || || || ||||| Sbjct 409372 CTTCGTCACCGGGTTCACGTAGAACTGCCCGAGAAGATGACAGGGCGGGAGCGCCATTTT 409431 Query 30031 AGGCCCAAGT-CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTT 30089 | || ||| | || ||||| ||| | || || |||| ||| | ||| | | Sbjct 409432 ATGC---AGTGCGGACGGATTCCACGCGATGAAGAGCATCCGCCGGTCGTTTGGTCTCGT 409488 Query 30090 CCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCT 30149 | ||| |||||| || || | ||||| || ||| |||| ||||| |||| Sbjct 409489 CTTGAGCGTTTCCACGATGTATTTGATTTGATCTACACCCTTCCCGTCGTAGTTCGCCCG 409548 Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 || || ||||| || |||||||||| ||| || || ||||| || || || || || Sbjct 409549 GTGGTTTGTATACTCCGCGCCGAAATGCCGCCATTGAAAGCCGTAAACAGGGCCGAGATC 409608 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 |||||| ||| | || || | | || | ||| | | ||| ||||| | || Sbjct 409609 CATCTCTTCGTTGTCGTGCAATCCGCGGCTATCAAGAAACGCACGGGAGCCGTTATCATC 409668 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCA 30329 |||||| | ||||| || ||| ||| || | |||||| || | || ||||| Sbjct 409669 CCAGATATGAACCCCTTTATCGCTCAGCAGCTTTGCGTTTGTCTCGCCGCGGAGAAACCA 409728 Query 30330 CAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG 30377 |||||||||||| |||| || ||||||||| | ||||| ||||| Sbjct 409729 CAGCAGCTCCTCGGAGACGCCCCGCCAAAAGACGCGTTTGGTGGTGAG 409776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617181677732