Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq8 122 2e-22 >seq8 Length=1060349 Score = 122 bits (134), Expect = 2e-22 Identities = 525/818 (64%), Gaps = 19/818 (2%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || || || || ||||| |||||||| ||||| || | | |||||| |||| Sbjct 1001171 CTGATACTCGCCAACCCTCTTCTCGAAGAAGTTAGTCTTTCCTTGAAGCGAGATCATCTC 1001112 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCC-AGCA 47957 ||||||| ||| || || | | ||| || | | | || ||| | || | Sbjct 1001111 CATGAAGTCGAACGGATTTGTAGCGTTGTA-ATGCTTTTCTTCACCAAGCGCAATGAGAA 1001053 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | | ||||| || |||||||||| | | ||| | | |||||| || || | Sbjct 1001052 GACGGTCCGCAACAAACTCGATGTACTGTCCCATCAACTCGGAGTTCATCCCAATCAAAC 1000993 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 || ||||| || | | |||||| | ||| || | ||| || | | | |||| Sbjct 1000992 GTACAGGCAACGCATCGCAAATAAACTCGTGCTCGATGTCCACCGCATTCGTGATGATCT 1000933 Query 48078 GCTTAACGCGGGACTCTGAGG--GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 | || || ||| |||| ||||||| | ||| | | || | || || || Sbjct 1000932 CCAGCACACGCGACC--GAGGTAGTTTGTTCTTGATGTGGTGAGAGTACAACAAACACGC 1000875 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 ||||||| ||||||| || || || || ||| || ||||| |||| || ||||| Sbjct 1000874 AAAGTCCGTGTGCAACCCCTCATCGCGCGAGATCAGTTCGTTGCTGAAGGTTAGCCCAGG 1000815 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||| || || | || |||||||||||| | ||| || || || || |||||||| || Sbjct 1000814 CATCACGCCGCGCTTTTTGAGCCAGAACAGTGCACAAAATGACCCTGAAAAGAAGATACC 1000755 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTG-TCTGAGATCC 48314 |||||| || || |||||| | || | ||| || || | ||| | || | |||| Sbjct 1000754 CTCCACAGCTGCAAACGCGATCAGGCGCTCCTGGA---AACTGCTCTCGCTCCCA-ATCC 1000699 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC---CCGGA 48371 | | ||||| || ||||| || | ||| || || ||||||| || || | | | Sbjct 1000698 ATCGTACAGCCCACTCGGCCTTATTTTGGATACACGGAATCGTCTGAATCGCGTGCAGCA 1000639 Query 48372 AGAGCTTCTTGCACTCA-CCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATC 48430 | | ||| |||| |||| ||| || || || |||||| | |||| || Sbjct 1000638 AACGTAACTT---CTCATCCTG-ATCCATAATGTACGTGTCCAGCAGCACCGAGTACGTC 1000583 Query 48431 TCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACC 48490 || ||||| | |||||| || | ||| ||||||||||| || | ||||| | Sbjct 1000582 TCTGAGTGAATATTCTCCATCATCAGCTGAAACCCGTAGAACGCACGCGCCTCTGGTATT 1000523 Query 48491 TGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCA 48550 | ||| || || ||| | || | || ||||| |||| || || || | || Sbjct 1000522 TTCACGTCCGTCATGAAGCGCTGCGCGAGGTTCTCGATGACGATGCCGTCGCTTCCCGCG 1000463 Query 48551 AAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCC 48610 ||||| ||||| || || || | |||||| ||||| | | | || |||| || Sbjct 1000462 AAGAACGCAAGCACGTGCTTGATGAAATGTCGCTCCCCATCGTTCAGCTTCACCCAGTCC 1000403 Query 48611 TGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCA 48648 | || |||||||||| | |||||||| ||||| Sbjct 1000402 ACCATATCGCTGCCCAGGTCGATCTCTTCCACCGTCCA 1000365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931531821890560