Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq8 100 3e-16 >seq8 Length=1060349 Score = 100 bits (110), Expect = 3e-16 Identities = 303/458 (66%), Gaps = 19/458 (4%) Strand=Plus/Plus Query 65077 GAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCT 65136 |||||||| | |||||||| |||||||||||||||||| || |||||||| || || Sbjct 1000725 GAGCGCCTGATCGCGTTTGCAGCTGTGGAGGGTATCTTCTTTTCAGGGTCATTTTGTGCA 1000784 Query 65137 ATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATT 65196 | | ||| | || ||||| || | ||||| || ||| |||| || ||||| || Sbjct 1000785 CTGTTCTGGCTCAAAAAGCGCGGCGTGATGCCTGGGCTAACCTTCAGCAACGAACTGATC 1000844 Query 65197 TCCCGAGATGAGGGTCTCCACCAGGAGTTTGC-----CGTGGAGCTCTTCAAGACTTTGC 65251 || || |||||||| | ||| ||| ||||| || | ||| ||| || | Sbjct 1000845 TCGCGCGATGAGGGGTTGCACACGGACTTTGCGTGTTTGTTGTACTC-TCACCACAT--- 1000900 Query 65252 GTAATAGACCCACTACC---GAAAC-TATCCACGCCATCGTGAAAGAGGCGGTTGAGATT 65307 || | || |||||| | | | | | | ||| | | | ||||| || || Sbjct 1000901 -CAAGA-ACAAACTACCTCGGTCGCGTGTGCTGGAGATCATCACGAATGCGGTGGACATC 1000958 Query 65308 GAGAAAGGGTTCATCTTGGACGCACTCCCATGTA-ATCTCATCGGTATGAACTCTGAGAA 65366 ||| | | ||| || | || || | || |||| | | || || |||||||| ||| Sbjct 1000959 GAGCACGAGTTTATTTGCGATGCGTTGCC-TGTACGTTTGATTGGGATGAACTCCGAGTT 1001017 Query 65367 GATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGG-GGTGCCAC 65425 |||| ||||||| |||| ||| |||| ||||| |||| |||| | | | Sbjct 1001018 GATGGGACAGTACATCGAGTTTGTTGCGGACCGTCTTCTCATTGCGCTTGGTGAAGAAAA 1001077 Query 65426 CCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGA 65485 || || ||||| | ||||| || ||||| ||||| | || ||| | || |||| Sbjct 1001078 GCA-TTACAACGCTACAAATCCGTTCGACTTCATGGAGATGATCTCGCTTCAAGGAAAGA 1001136 Query 65486 CCAACTTCTTTGAGAAGCGAGTTGGGGACTATGGGAAA 65523 | |||||||| |||||| | ||||| || ||| |||| Sbjct 1001137 CTAACTTCTTCGAGAAGAGGGTTGGCGAGTATCAGAAA 1001174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596568973601920