Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq4 378 9e-100 seq7 109 7e-19 >seq4 Length=1647180 Score = 378 bits (418), Expect = 9e-100 Identities = 1039/1578 (66%), Gaps = 22/1578 (1%) Strand=Plus/Plus Query 195298 AGCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCG 195357 ||||||||| || ||| | || || || |||||||| || ||||| |||||||| || || Sbjct 980082 AGCTATTGGCATTGATCTGGGCACGACGTACTCATGCGTAGGTGTGTGGCAAAACGAGCG 980141 Query 195358 TGTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTAC 195417 ||| ||||| ||| |||| || || || ||||| || || ||||| || || ||||| || Sbjct 980142 TGTGGAGATCATCGCGAACGATCAGGGCAACCGAACGACGCCATCCTATGTGGCCTTCAC 980201 Query 195418 AGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAA 195477 ||||| || | || |||| ||||| || || || ||| || |||||||| || Sbjct 980202 TGATAACGAGAGGCTAATTGGTGATGCTGCCAAGAACCAGGTCGCCATGAACCCGCAAAA 980261 Query 195478 TACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGA 195537 || ||||| ||||||||||| || || || || || || || | || || Sbjct 980262 CACCGTCTTCGACGCGAAGCGCCTCATCGGGCGGAACTTCAAAGACCACTTGGTGCAGCT 980321 Query 195538 CGATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTG-GCTGATAAGCCTATGATTA 195596 ||| || ||| ||||| | | | ||| || | || ||| | || ||||| |||| Sbjct 980322 CGACATGAAGCACTGGCCCT-TCAAGGTGGTGACGAAGTGCGACGACAAGCCGCTGATCC 980380 Query 195597 ATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGT 195656 | ||| || ||||| ||| | || || | || || || || || |||||| Sbjct 980381 AGGTTTCGTTCCACGGCGAGGATAAGACGTTCACACCGGAGGAGATCAGCTCGATGGTGC 980440 Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTG 195716 || | ||||||||||| || ||||| || | | | || || ||||| | || || Sbjct 980441 TGGTGAAGATGAAGGATACGGCGGAGTCGTACCTTGGGAAGCAGGTGAAGAAAGCGGTGA 980500 Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTA 195776 | || || ||||| ||||||| || || || || ||||| || |||||||| | || | Sbjct 980501 TCACGGTTCCTGCGTACTTCAACGACTCGCAGCGTCAGGCCACCAAGGACGCCGGTGTGA 980560 Query 195777 TTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATG 195836 |||| || || | || | || ||||| || || || || || || || || || | Sbjct 980561 TTGCTGGGCTTGAGGTGCTGCGCATCATCAACGAGCCGACGGCTGCGGCCATCGCGTACG 980620 Query 195837 GTCTGGACAAGAACAAGGA---CGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTG 195893 | || |||||| || ||| | | || || || | ||||| || || || || | Sbjct 980621 GCCTCGACAAGTGCACGGAGAGCCAGGAGCTCAACGTCCTCATCTTCGACCTTGGCGGCG 980680 Query 195894 GTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTG 195953 | ||||| |||||| | | || | || || || || || |||||||| ||||| || | Sbjct 980681 GCACGTTCGATGTCACGTTGCTGACGATCGATGGCGGCATCTTCGAAGTGAAGGCAACCG 980740 Query 195954 CTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCT--TCTCCGTCATTTGTC 196011 | || || || ||||| || ||||| || | || || || | | || || Sbjct 980741 CCGGCGACACCCATCTCGGCGGTGAGGACCTTGACAACCGACTGGTGAACTTC--TTCAG 980798 Query 196012 TGATGAGTTCCGTCGAAAGAA---TAAGAAAGATAT-TTCTGGAAATCCTAGGGCT--CT 196065 ||||||||| | || ||||| | ||| ||||| | || || | || ||| || Sbjct 980799 CGATGAGTTCAGGCGCAAGAACCGTGGGAAGGATATGTCCTCGA---GCCAGCGCTCGCT 980855 Query 196066 TCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAAC 196125 || || || | || || || ||||| ||||| || || || || ||| || | ||| | Sbjct 980856 GCGCCGCCTGCGCACCGCGTGCGAACGCGCCAAGCGCACCCTGTCCTCTGCGACGCAAGC 980915 Query 196126 AATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTA-TACAACTATTACCCGTG 196184 | | ||||| || || | || || | ||||||||| | | |||| || ||||||| Sbjct 980916 CACCATCGAGATCGACGCGCTCTTCGATAGCATTGACTTCCAGTCCAAC-ATCACCCGTG 980974 Query 196185 CACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAG 196244 | || || || ||| | | || | || | ||| ||| || || || || | | Sbjct 980975 CCCGCTTCGAGGAGCTGTGCAGCGACCTCTTCCGCAAGACTATCGATCCCGTCGAGCGCG 981034 Query 196245 TACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGAT 196304 | || | ||| | |||||||| ||| | || | || | || || || || || | Sbjct 981035 TCCTCCAGGACTCCAAGATGGACAAGCGTGCTGTGCACGAGGTCGTGCTCGTCGGCGGCT 981094 Query 196305 CAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAA 196364 | || |||||||| ||| | || | || | || ||| ||| | || || | | Sbjct 981095 CCACACGTATTCCCAAGGTACAGTCGCTGGTCTCCGACTTTTTCGGTGGCAAGGAGCTGA 981154 Query 196365 ACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTC 196424 |||| | |||||||| || ||||| ||||| || ||||||||||| ||||| || | Sbjct 981155 ACAAGAGCATCAACCCCGACGAAGCCGTTGCGTACGGTGCGGCCGTGCAGGCGTTCATCC 981214 Query 196425 TCTCAGGTGTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTAT 196484 | | || | | | || | | | || ||||| || || || | || | Sbjct 981215 TGACCGGCGGCAAGAGCAAGCAGACGGAGGGCCTGCTGCTGCTGGACGTGACCCCGCTCA 981274 Query 196485 CCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTA 196544 | || || | || || || || || | ||||| | || | | |||| || | Sbjct 981275 CGCTCGGGATCGAGACGGCCGGCGGCATCATGACGTCGCTCATCAAGCGCAACATGACGA 981334 Query 196545 TTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATA 196604 | ||||| ||||||| || ||||| || ||||| ||||| || || || || || | Sbjct 981335 TCCCGACCAAGAAGGGCCAGGTCTTCTCGACGTACCAGGATAACCAGCCCGGCGTGCACA 981394 Query 196605 TTCAAGTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTC 196663 |||| || | ||||||||||| | | || | ||||| ||| || || || || ||| Sbjct 981395 TTCAGGTCTTCGAAGGAGAACG-TACGATGACGAAGGACTGCCACCTGCTCGGGACCTTC 981453 Query 196664 GATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGAT 196723 || | | ||||| || | || || | ||||| || ||||| | || |||||| Sbjct 981454 GACCTCTCTGGGATCCCCCCGGCGCCTCGTGGTGTGCCGCAGATCGAGGTCACCTTCGAC 981513 Query 196724 ATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAA 196783 | ||||| || || ||||| ||||| || || |||||||||| | ||||| | Sbjct 981514 GTTGACGCCAACGGCATTCTGAACGTGACGGCCGAGGACAAGGGCACCGGCAAGCGCAAC 981573 Query 196784 AAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTT 196843 |||| || |||||||||||||| || || |||| ||||| ||||| ||||| Sbjct 981574 CAGATCACCATCACCAATGACAAGGGTCGCCTCAGCAAGGCTGAAATCGAACGGATGGTC 981633 Query 196844 CAAGATGCGGAAAAGTAC 196861 | ||||| | |||||| Sbjct 981634 AATGATGCCGCCAAGTAC 981651 >seq7 Length=1072466 Score = 109 bits (120), Expect = 7e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || ||||| || | || || || || ||| | |||||||| ||| | Sbjct 364270 ATGCAGATTTTCGTGAAGACGTTGACGGGCAAGACGATCGCGCTCGAGGTCGAGGCCAGC 364211 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || || | || || |||||||| || ||||||||||| || || || || Sbjct 364210 GATACGATTGACAATGTGAAGGCGAAGATTCAGGACAAGGAAGGCATCCCTCCTGACCAA 364151 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || ||||| || || || ||| | || || ||||| || ||||| |||||||| Sbjct 364150 CAGCGCCTGATTTTCGCGGGCAAGCAGTTGGAGGAGGGACGCACGCTCGCCGATTACAAT 364091 Query 172042 GTTCAAAAGGAGTCTACTCTACA 172064 | || ||||| || || || || Sbjct 364090 ATCCAGAAGGAATCCACCCTGCA 364068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657861709244480