Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq8 120 4e-21 seq16 93.3 5e-13 seq21 87.8 2e-11 seq14 86.0 8e-11 >seq8 Length=1060349 Score = 120 bits (132), Expect = 4e-21 Identities = 217/313 (69%), Gaps = 7/313 (2%) Strand=Plus/Minus Query 868700 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 868759 |||||||| || | | |||||| ||||| ||||| || | |||||||||| |||||| Sbjct 1001167 TACTCGCCAACCCTCTTCTCGAAGAAGTTAGTCTTTCCTTGAAGCGAGATCATCTCCATG 1001108 Query 868760 CACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGG 868819 | |||||| || | | ||||| |||||||| || |||| ||| || ||| Sbjct 1001107 AAGTCGAACGGATTTGTAGCGTTGTAATGCTTTTCTTCACCAAGCGCAATGAGAAGACGG 1001048 Query 868820 TCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACC 868879 || || ||||||||||||||||| | ||| | ||| |||||| || || | || Sbjct 1001047 TCCGCAACAAACTCGATGTACTGTCCCATCAACTCGGAGTTCATCCCAATCAAACGTACA 1000988 Query 868880 GGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCTGCCTG 868939 |||| || |||| | |||||| | |||||| || || || | |||||||| || | Sbjct 1000987 GGCAACGCATCGCAAATAAACTCGTGCTCGATGTCCACCGCATTCGTGATGATCT-CCAG 1000929 Query 868940 GGCACGTCGGCCGAGG--GCTTG---TTGACGAGCATCGTGTAGAGCAGGCAGGCAAAGT 868994 |||| || |||||| | ||| |||| | | | ||| | || || ||||||| Sbjct 1000928 CACACG-CGACCGAGGTAGTTTGTTCTTGATGTGGTGAGAGTACAACAAACACGCAAAGT 1000870 Query 868995 CGCAGTGCAACCC 869007 | ||||||||| Sbjct 1000869 CCGTGTGCAACCC 1000857 Score = 111 bits (122), Expect = 2e-18 Identities = 196/286 (69%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| || ||||| || | ||| || ||||| || || | | |||||| | || Sbjct 1000579 GAGTGAATATTCTCCATCATCAGCTGAAACCCGTAGAACGCACGCGCCTCTGGTATTTTC 1000520 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || ||| ||||||| || || ||||||||| |||||||||||||| | ||||| Sbjct 1000519 ACGTCCGTCATGAAGCGCTGCGCGAGGTTCTCGATGACGATGCCGTCGCTTCCCGCGAAG 1000460 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || ||||||||||| || || ||||| | ||| | ||| |||||||| || Sbjct 1000459 AACGCAAGCACGTGCTTGATGAAATGTCGCTCCCCATCGTTCAGCTTCACCCAGTCCACC 1000400 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 | ||| || ||||| | ||| || | ||||| || || ||| || |||||| Sbjct 1000399 ATATCGCTGCCCAGGTCGATCTCTTCCACCGTCCAAATACAGCTCTCCTGCTCCTTGTAC 1000340 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGT 869918 | ||| | | ||||| | || ||||| | |||| | |||| Sbjct 1000339 TTTCGCCAGATGTCATGGTACTGAATCGGGAACATGACATACCGGT 1000294 >seq16 Length=194027 Score = 93.3 bits (102), Expect = 5e-13 Identities = 121/165 (73%), Gaps = 7/165 (4%) Strand=Plus/Plus Query 509111 GGCGGGC-GCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCCGAGACGGGCTACATCCA 509169 ||||||| |||| || || |||||||| || || ||||| || | ||| || |||| Sbjct 102228 GGCGGGCCGCGATGGGCTGGTCGACACCGCGGTGAAGACCTCCCGCTCCGGCCACCTCCA 102287 Query 509170 GCGCCGGTGCATCAAGTCGATGGAGAGCCTGCAGATCAAGCGCGG---CGGCCTCGTGCG 509226 |||| | |||||| ||||||||||||| || | || | |||| ||| || Sbjct 102288 GCGCTGCCTGATCAAGGCGATGGAGAGCCTCG---TCGTGGGCTGGGACGGCTCCGTCCG 102344 Query 509227 CAACGCCAACGGCGACATCGTCCAGTTTGCCTATGGCGGCGACGG 509271 | |||| ||||||| | |||||||||| | ||| ||||||||||| Sbjct 102345 CGACGCGAACGGCGCCGTCGTCCAGTTCGTCTACGGCGGCGACGG 102389 >seq21 Length=127046 Score = 87.8 bits (96), Expect = 2e-11 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 507104 GAGCGGTTCAAGGGCAAGGAGGGTAGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAAC 507163 ||||| | || || ||| | || ||| | || ||||||| ||||||||||| || | Sbjct 38842 GAGCGTCTTAAAGGAAAGTACGGGAGGCTGCGGGGCAATTTGATGGGCAAGCGGGTGGAT 38783 Query 507164 TTTACCGCGCGCGCCGTCATCAGCCCCGACCCCGAGATCGACATTGACGAGGTGGGCGTG 507223 || ||||||| ||||||||| || || | || ||| | || |||||||||||| Sbjct 38782 TTCTCCGCGCGAACCGTCATCACGGGGGATCCGAATATTGACGTGGATGAGGTGGGCGTG 38723 Query 507224 CCCTATGAGATCGTCAAGACGCTCACCTTTCCCGAGCGCGT 507264 |||| | ||||| | ||||| |||||||| || || || Sbjct 38722 CCCTTTTCGATCGCCGCCACGCTGACCTTTCCGGAACGGGT 38682 >seq14 Length=332912 Score = 86.0 bits (94), Expect = 8e-11 Identities = 123/168 (73%), Gaps = 9/168 (5%) Strand=Plus/Plus Query 733110 CGCCACGGCCAAAAGGGCACCGTGGGCAGCGTGCGCTCCACC--GAGGACATGCCCTGGT 733167 || |||||||||||||| || |||| | ||| || |||||| | |||| | Sbjct 282773 CGGCACGGCCAAAAGGGGACGAACGGCATCCAAT--TCCGCCAGGAGGACCT-CCCTTTT 282829 Query 733168 CGCCGCG-CGGCGGCGCCACGCCCGACATCGTGATCAACCCGCACGCCATCCCGTCGCGC 733226 ||||| ||||| || | |||||| | | |||||||||||||||||||| |||||| Sbjct 282830 AACCGCGACGGCGTCGTC---CCCGACCTGATCATCAACCCGCACGCCATCCCCTCGCGC 282886 Query 733227 ATGACCATGGGCAAGATGCTCGAGGCCCTCCTGGGCAAGGTGGCCTGC 733274 ||||| ||| | | | ||||| ||||| ||||||||||||||| Sbjct 282887 ATGACGGTGGCCCACCTCATCGAGACCCTCGCCGGCAAGGTGGCCTGC 282934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107132306566628