Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq5 123 2e-23 seq1 107 2e-18 seq14 96.9 3e-15 >seq5 Length=1237164 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || ||||| || || || || ||||||| ||||| || | | Sbjct 1116874 ATGCAGATCTTCGTGAAGACACTAACAGGGAAGACAATAGCGCTCGAGGTAGAGGCTAGC 1116815 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| |||||||||||||| || || || || || || || Sbjct 1116814 GACACTATTGATAACGTAAAGGCGAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCAG 1116755 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||| ||||| || |||||| ||||||| | | | | || || ||| Sbjct 1116754 CAGCGGCTGATTTTTGCAGGCAAACAGTTGGAGGAGGGTCGTACTCTCGCCGACTACAAC 1116695 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || ||||||||||| ||||| || |||||| | || |||| || ||| Sbjct 1116694 ATCCAAAAGGAATCCACACTGCATTTGGTGCTCCGTCTGCGTGGTGGC 1116647 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || |||||||| || || || || |||| || ||||| || | | Sbjct 1116646 ATGCAGATCTTCGTGAAGACGCTAACAGGGAAGACAATAGCGCTTGAGGTAGAGGCTAGC 1116587 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| |||||||||||||| || || || || || || || Sbjct 1116586 GACACTATTGATAACGTAAAGGCGAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCAG 1116527 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||| ||||| || |||||| |||| || | | | | || || ||| Sbjct 1116526 CAGCGGCTGATTTTTGCAGGCAAACAGTTGGAAGAGGGTCGTACTCTCGCCGACTACAAC 1116467 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || ||||||||||| ||||| || |||||| | || | || || ||| Sbjct 1116466 ATCCAAAAGGAATCCACACTGCATTTGGTGCTTCGCCTACGTGGCGGC 1116419 >seq1 Length=2329561 Score = 107 bits (118), Expect = 2e-18 Identities = 307/470 (65%), Gaps = 4/470 (1%) Strand=Plus/Minus Query 139394 TCGC-CTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGC 139452 |||| ||| |||||| ||| || ||||| || ||||| | || | | | ||| ||| Sbjct 95983 TCGCTCTTCACGCGCTCCATAAAAAGATCAGGTATCCAAAGCCCGTAAAAAAGATCACGC 95924 Query 139453 GCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCG 139512 ||| || ||| ||| || |||| || || | | | || || |||| || || Sbjct 95923 GCCCGCTGATCCTCCTTCCCGGTGTTCCGCTTTAACATGACAAACTCGAAAATATCCGCA 95864 Query 139513 TGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTGCCACCT---TGATCGACG 139569 ||||| || |||||||| | || | ||| ||||| |||||||| ||| |||||||| Sbjct 95863 TGCCAGGGCTCCAGATAAACCGCAAATGCCCCTTTGCGTTTGCCCCCTCCTTGATCGACA 95804 Query 139570 TGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTG 139629 | ||| | | ||||| || || |||| ||||||| ||| ||| ||| |||||||| Sbjct 95803 TAACGTGCGGTGTTATTAAAAACCCGCAGCATCGGCACCAACCCGTTCGAAGTTCCGTTC 95744 Query 139630 GTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCG 139689 || | ||| ||| | ||||| | || || || | | || || || || Sbjct 95743 GTCCCGGCGATATAACTTCCGGAGGCTCGAATGTTGTGAACGTGCAGTCCAATCCCCCCT 95684 Query 139690 CCAAATTTGGATATTAAAACGCAATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCG 139749 | ||| || | |||| || || || ||||| || ||| || ||||| Sbjct 95683 GCTGCCTTGCTAATCACGGCGCACTCCTTCAAAGTGTCGTAAATCCCTTCAATACTGTCC 95624 Query 139750 TCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAAC 139809 |||| ||||| | | |||||| || | ||||| | |||||||| |||| Sbjct 95623 TCCTTCATCGCTATTAAAAAGCAGGAACTCATCTGCGGACGGGGGGTGCCGGCGTTAAAC 95564 Query 139810 AGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGT 139859 | || || ||||||| ||||| | ||||||||||| ||||| || Sbjct 95563 AACGTCGGGGTCGCGTGGGTGAAAAAGCCATTCGACATCAAATCGTAGGT 95514 >seq14 Length=332912 Score = 96.9 bits (106), Expect = 3e-15 Identities = 167/243 (69%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||| | || || || || || ||||||| || || |||| | Sbjct 28078 ATGCAGATCTTCGTGAAGACGTTGACGGGCAAGACGATCGCGCTCGAGGTCGAGGCCAGC 28137 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||||| || || || || || || || Sbjct 28138 GATACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCCCCGGACCAG 28197 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| |||| || || || |||||| ||||||| | | | | ||||| ||| Sbjct 28198 CAACGCCTGATTTTCGCGGGCAAACAGTTGGAGGAGGGCCGCACGCTCGCCGATTACAAC 28257 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCCA 24943 || || |||||||| || || || ||||| | || |||| || || | | ||||| Sbjct 28258 ATCCAGAAGGAATCCACCCTGCATTTGGTCCTCCGTCTGCGTGGCGGGGTGATGGAGCCG 28317 Query 24944 ACG 24946 ||| Sbjct 28318 ACG 28320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897127607520