Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytomonas_20sp._20isolate_20Hart1_20[genbank_20GCA_5F000982615.1_20 2014-03-12] 84 sequences; 18,129,152 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq8 107 3e-17 seq14 98.7 2e-14 seq1 86.0 1e-10 >seq8 Length=1060349 Score = 107 bits (118), Expect = 3e-17 Identities = 127/172 (74%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| |||| || || ||| |||||||||| || |||||||| ||||||||| Sbjct 1000534 GCCTCTGGTATTTTCACGTCCGTCATGAAGCGCTGCGCGAGGTTCTCGATGACGATGCCG 1000475 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||||| | ||||| || || || ||||||||||| || || ||||| | ||| | ||| Sbjct 1000474 TCGCTTCCCGCGAAGAACGCAAGCACGTGCTTGATGAAATGTCGCTCCCCATCGTTCAGC 1000415 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAA 796321 ||||||| ||| | ||| ||| ||||||| ||| || | ||||||| Sbjct 1000414 TTCACCCAGTCCACCATATCGCTGCCCAGGTCGATCTCTTCCACCGTCCAAA 1000363 >seq14 Length=332912 Score = 98.7 bits (108), Expect = 2e-14 Identities = 254/388 (65%), Gaps = 14/388 (4%) Strand=Plus/Plus Query 653753 CCCGACATCGTCATCAACCCGCACGCCATCCCGTCGCGCATGACCATGGGCAAGATGATG 653812 |||||| | |||||||||||||||||||||| ||||||||||| ||| | | | || Sbjct 282848 CCCGACCTGATCATCAACCCGCACGCCATCCCCTCGCGCATGACGGTGGCCCACCTCATC 282907 Query 653813 GAGGCCCTCCTGGGCAAGGTGGCCTGCCGCGAGGGCTACGTGGGCGACGGCACCCCGTTT 653872 ||| ||||| ||||||||||||||| |||| | || | ||| || || || Sbjct 282908 GAGACCCTCGCCGGCAAGGTGGCCTGCTATAAGGGGGGGGAGGTCTACGCGACGCCCTTC 282967 Query 653873 GGCGGCGTCACCGTNNNNNNNNNNNNNNNNNAGTTGGCCCGCCA------CGGGTGCGAG 653926 || ||| ||| || ||||| ||| ||| | | || Sbjct 282968 TGCTCGGTCGTCGT----GGAGGACTTCGGCAG--GGCCCTCCACCAACTCGGCTCCCAG 283021 Query 653927 CGCTACGGCAAGGAGGTGCTCTACCACCCGCACACGGGCGAGCCCATGGAGGCGTTGATC 653986 ||||||||||| ||| || ||| || ||||| ||| |||| |||| | || Sbjct 283022 CGCTACGGCAACGAGTGCCTGTACAACGGCCACACCGGCCTGCCCCTGGACCACCTCATT 283081 Query 653987 TT-TTCGGCGCCGGTCTACTACCAGGCCCTGCGCCACGTGGCCATCGACAAGATCCACGC 654045 || |||||| ||| ||| || ||| ||| ||| || || ||||| |||||||| Sbjct 283082 TTCTTCGGC-CCGACCTATTATCAGCGGCTGAAGCACTTGTCCGAGGACAAAATCCACGC 283140 Query 654046 CCGGCCGCGCGGCCCCGTGCAGATGCTCACCAAGCAGCCGGTCGAGGGCCGGTCGCGCTC 654105 ||| |||||||| || | ||| ||| | ||||| |||||| || ||| | Sbjct 283141 CCGCCCGCGCGGGCCGCTCCAGCCGCTTGTCCGACAGCCCACCGAGGGGCGCGCGCACGA 283200 Query 654106 GGGCGGCTTTCGCCTCGGAGAGATGGAG 654133 ||| ||| |||| | || || |||||| Sbjct 283201 GGGGGGCCTTCGGTTTGGCGAAATGGAG 283228 >seq1 Length=2329561 Score = 86.0 bits (94), Expect = 1e-10 Identities = 125/169 (74%), Gaps = 6/169 (4%) Strand=Plus/Plus Query 2018916 CCGTGGATCGAAAAGTACCGCCCGACAGT-GCTCGACGACATCGTGGGCAACGAGCACGC 2018974 |||||| |||||| ||||||||| ||| | | | ||| |||||||||||| | || Sbjct 245550 CCGTGGGTCGAAATGTACCGCCCT-CAGACGATGGCCGATATCGTGGGCAACTCTGAGGC 245608 Query 2018975 CGTTGC-CTACCTCAAGGCGCTGGCCGCCGACGGCAACATGCCCAACCTCTTGCT-GGCG 2019032 ||| | | | ||||| | | || || |||||| | |||||||||||||| ||| Sbjct 245609 TGTTTCTCGTCTTCAAGTCA-TCGCGAGGGAGGGCAACCTCCCCAACCTCTTGCTCTGCG 245667 Query 2019033 GGCCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCG 2019081 | ||| ||||| || || |||||||||||||| ||||| ||||||| Sbjct 245668 GTCCC-CCCGGGACTGGAAAGACCACGAGCATGCTCTGCCTCGCGCGCG 245715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916237464536876